Evidence map›Paper›PMID 34616608›Full record

ArticlePeerJ2021

A cross-sectional study of the nasal and fecal microbiota of sows from different health status within six commercial swine farms.

Andreia G Arruda, Loic Deblais, Vanessa L Hale, Christopher Madden, Monique Pairis-Garcia, Vishal Srivastava, Dipak Kathayat, Anand Kumar, Gireesh Rajashekara

Abstract read
In one paragraph

Article in PeerJ, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Andreia G ArrudaDepartment of Veterinary Preventive Medicine, The Ohio State University, Columbus, OH, United States of America.
Loic DeblaisDepartment of Veterinary Preventive Medicine, The Ohio State University, Columbus, OH, United States of America.
Vanessa L HaleDepartment of Veterinary Preventive Medicine, The Ohio State University, Columbus, OH, United States of America.
Christopher MaddenDepartment of Veterinary Preventive Medicine, The Ohio State University, Columbus, OH, United States of America.
Monique Pairis-GarciaDepartment of Population Health and Pathobiology, North Carolina State University, Raleigh, NC, United States of America.
Vishal SrivastavaDepartment of Veterinary Preventive Medicine, The Ohio State University, Columbus, OH, United States of America.
Dipak KathayatDepartment of Veterinary Preventive Medicine, The Ohio State University, Columbus, OH, United States of America.
Anand KumarBiosecurity and Public Health Group, Bioscience Division, Los Alamos National Laboratory, Los Alamos, NM, United States of America.
Gireesh RajashekaraDepartment of Veterinary Preventive Medicine, The Ohio State University, Columbus, OH, United States of America.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundCull sows are a unique population on swine farms, often representing poor producing or compromised animals, and even though recent studies have reported that the microbiome is associated with susceptibility to diseases, the microbiome of the cull sow population has not been explored. The main objective of this study was to investigate whether there were differences in fecal and upper respiratory tract microbiota composition for groups of sows of different health status (healthy, cull, and compromised/ clinical sows) and from different farms (1 to 6).

methodsSix swine farms were visited once. Thirty individual fecal samples and nasal swabs were obtained at each farm and pooled by five across health status and farm. Samples underwent 16S rRNA gene amplicon sequencing and nasal and fecal microbiota were analyzed using QIIME2 v.2021.4.

resultsOverall, the diversity of the nasal microbiota was lower than the fecal microbiota ( DISCUSSION: This study provided baseline information for nasal and fecal microbiota of sows under field conditions, and results suggest that farm of origin can affect microbial diversity and composition. Furthermore, sow's health status may have an impact on the nasal microbiota composition.

Indexed as

Cull sowsNasal and fecal microbiotaSwineSwine healthSwine microbiota

Identifiers

PMID34616608
PMCPMC8451438

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.