ArticleNature2021
Epigenomic diversity of cortical projection neurons in the mouse brain.
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Article in Nature, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers, 1 of them a synthesis that pooled it.
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51citing papers in PubMed, 1 pooled it
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Who cites it
51 citing papers in PubMed, 1 synthesis or guideline pooled it.
- Functional genomic mechanisms of opioid action and opioid use disorder: a systematic review of animal models and human studies.Molecular psychiatry · 2023Pooled it
- Integrative analysis of single-cell multi-omics reveals heterogeneity in piriform cortex principal neurons and their selective vulnerability in Alzheimer's disease.Clinical and translational medicine · 2026Article
- Human body single-cell atlas of three-dimensional genome organization and DNA methylation.Science (New York, N.Y.) · 2026Article
- Cortical PV and VIP interneurons similarly influence SST neuron output despite distinct unitary properties.Communications biology · 2026Article
- Single-nucleus multiomic atlas of ALS primary motor cortex nominates neuroprotective WDR49-expressing astrocytes.Research square · 2026Article
- MultiSP deciphers tissue structure and multicellular communication from spatial multi-omics data.Cell genomics · 2026Article
- mist: a hierarchical Bayesian framework for detecting differential DNA methylation dynamics in single-cell data.Nature communications · 2026Article
- Organization of mouse prefrontal cortex subnetwork revealed by spatial single-cell multi-omic analysis of SPIDER-Seq.National science review · 2026Article
- Projection-TAGs enable multiplex projection tracing and multi-modal profiling of projection neurons.Nature communications · 2025Article
- MeCP2 and non-CG DNA methylation stabilize the expression of long genes that distinguish closely related neuron types.Nature neuroscience · 2025Article
- Projection-TAGs enable multiplex projection tracing and multi-modal profiling of projection neurons.bioRxiv : the preprint server for biology · 2025Article
- Transcriptomic and spatial GABAergic neuron subtypes in zona incerta mediate distinct innate behaviors.Nature communications · 2025Article
- Spatial integration of multi-omics single-cell data with SIMO.Nature communications · 2025Article
- How do neurons live long and healthy? The mechanism of neuronal genome integrity.Frontiers in neuroscience · 2025Review
- The cell-type underpinnings of the human functional cortical connectome.Nature neuroscience · 2025Article
- Single-cell RNA sequencing of adult primate neocortex reveals the regulatory dynamics of neural plasticity.American journal of translational research · 2025Article
- Profiling gene alterations in striatonigral neurons associated with incubation of methamphetamine craving by cholera toxin subunit B-based fluorescence-activated cell sorting.Frontiers in cellular neuroscience · 2025Article
- Single-cell and spatial alterations of neural cells and circuits in clinical and translational medicine.Clinical and translational medicine · 2024Article
- High-throughput mapping of single-neuron projection and molecular features by retrograde barcoded labeling.eLife · 2024Article
- Enabling neighbour labelling: using synthetic biology to explore how cells influence their neighbours.Development (Cambridge, England) · 2024Review
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
32 authors.
Zhuzhu Zhang *Genomic Analysis Laboratory, The Salk Institute for Biological Studies, La Jolla, CA, USA.
Jingtian Zhou *Genomic Analysis Laboratory, The Salk Institute for Biological Studies, La Jolla, CA, USA.ORCID http://orcid.org/0000-0003-2060-1922
Pengcheng TanGenomic Analysis Laboratory, The Salk Institute for Biological Studies, La Jolla, CA, USA.
Yan PangSystems Neurobiology Laboratories, The Salk Institute for Biological Studies, La Jolla, CA, USA.
Angeline C RivkinGenomic Analysis Laboratory, The Salk Institute for Biological Studies, La Jolla, CA, USA.
Megan A KirchgessnerSystems Neurobiology Laboratories, The Salk Institute for Biological Studies, La Jolla, CA, USA.
Elora WilliamsMolecular Neurobiology Laboratory, The Salk Institute for Biological Studies, La Jolla, CA, USA.
Cheng-Ta LeePeptide Biology Laboratories, The Salk Institute for Biological Studies, La Jolla, CA, USA.
Hanqing LiuGenomic Analysis Laboratory, The Salk Institute for Biological Studies, La Jolla, CA, USA.
Alexis D FranklinSystems Neurobiology Laboratories, The Salk Institute for Biological Studies, La Jolla, CA, USA.
Paula Assakura MiyazakiSystems Neurobiology Laboratories, The Salk Institute for Biological Studies, La Jolla, CA, USA.
Anna BartlettGenomic Analysis Laboratory, The Salk Institute for Biological Studies, La Jolla, CA, USA.
Andrew I AldridgeGenomic Analysis Laboratory, The Salk Institute for Biological Studies, La Jolla, CA, USA.ORCID http://orcid.org/0000-0003-1962-8802
Minh VuSystems Neurobiology Laboratories, The Salk Institute for Biological Studies, La Jolla, CA, USA.
Lara BoggemanFlow Cytometry Core Facility, The Salk Institute for Biological Studies, La Jolla, CA, USA.
Conor FitzpatrickFlow Cytometry Core Facility, The Salk Institute for Biological Studies, La Jolla, CA, USA.
Joseph R NeryGenomic Analysis Laboratory, The Salk Institute for Biological Studies, La Jolla, CA, USA.ORCID http://orcid.org/0000-0003-0153-5659
Rosa G CastanonGenomic Analysis Laboratory, The Salk Institute for Biological Studies, La Jolla, CA, USA.
Mohammad RashidSystems Neurobiology Laboratories, The Salk Institute for Biological Studies, La Jolla, CA, USA.
Matthew W JacobsSystems Neurobiology Laboratories, The Salk Institute for Biological Studies, La Jolla, CA, USA.
Tony Ito-ColeSystems Neurobiology Laboratories, The Salk Institute for Biological Studies, La Jolla, CA, USA.
Carolyn O'ConnorFlow Cytometry Core Facility, The Salk Institute for Biological Studies, La Jolla, CA, USA.
António Pinto-DuartecComputational Neurobiology Laboratory, The Salk Institute for Biological Studies, La Jolla, CA, USA.ORCID http://orcid.org/0000-0002-2215-7653
Bertha DominguezPeptide Biology Laboratories, The Salk Institute for Biological Studies, La Jolla, CA, USA.
Jared B SmithMolecular Neurobiology Laboratory, The Salk Institute for Biological Studies, La Jolla, CA, USA.ORCID http://orcid.org/0000-0002-0273-4898
Sheng-Yong NiuGenomic Analysis Laboratory, The Salk Institute for Biological Studies, La Jolla, CA, USA.
Kuo-Fen LeePeptide Biology Laboratories, The Salk Institute for Biological Studies, La Jolla, CA, USA.
Xin JinMolecular Neurobiology Laboratory, The Salk Institute for Biological Studies, La Jolla, CA, USA.ORCID http://orcid.org/0000-0002-1106-4013
Eran A MukamelDepartment of Cognitive Science, University of California, San Diego, La Jolla, CA, USA.ORCID http://orcid.org/0000-0003-3203-9535
M Margarita BehrensComputational Neurobiology Laboratory, The Salk Institute for Biological Studies, La Jolla, CA, USA.ORCID http://orcid.org/0000-0002-7168-8186
Joseph R EckerGenomic Analysis Laboratory, The Salk Institute for Biological Studies, La Jolla, CA, USA. ecker@salk.edu.ORCID http://orcid.org/0000-0001-5799-5895
Edward M CallawaySystems Neurobiology Laboratories, The Salk Institute for Biological Studies, La Jolla, CA, USA. callaway@salk.edu.ORCID http://orcid.org/0000-0002-6366-5267
Funding
Viral Vector Core (VVC)P30CA014195 · NCI · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI Ye Zheng · 1985 to 2026
$82.8MMolecular SignaturesU19MH114831 · NIMH · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI DONG, HONG-WEI · 2017 to 2021
$24.6MLocal Connections of Inhibitory Cortical NeuronsR01MH063912 · NIMH · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI CALLAWAY, EDWARD M · 2001 to 2020
$8.4MOrganization and Function of Visual Cortical Feedback SystemsR01EY022577 · NEI · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI EDWARD M CALLAWAY · 2012 to 2026
$8.0MNeurosciences Graduate Training ProgramT32NS061847 · NINDS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Brenda L Bloodgood · 2008 to 2026
$7.7MGenetic models of sporadic Alzheimers Disease in the marmosetR24AG073205 · NIA · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI LEE, KUO-FEN · 2021 to 2024
$5.7MModeling Alzheimer's Disease Related Dementias in the MarmosetR61NS115183 · NINDS · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI LEE, KUO-FEN · 2019 to 2019
$2.6MModeling Alzheimer's Disease Related Dementias in the MarmosetR33NS115183 · NINDS · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI LEE, KUO-FEN · 2022 to 2023
$1.9MFunctional characterization of distinct cortical inputs to higher-order visual thalamusF31EY028853 · NEI · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI KIRCHGESSNER, MEGAN ANNE · 2018 to 2020
$126kHoward Hughes Medical InstituteNCI NIH HHS P30 CA014195NEI NIH HHS F31 EY028853NEI NIH HHS R01 EY022577NIA NIH HHS R24 AG073205NIMH NIH HHS R01 MH063912NIMH NIH HHS U19 MH114831NINDS NIH HHS R33 NS115183NINDS NIH HHS R61 NS115183NINDS NIH HHS T32 NS061847
Abstract
Neuronal cell types are classically defined by their molecular properties, anatomy and functions. Although recent advances in single-cell genomics have led to high-resolution molecular characterization of cell type diversity in the brain
Indexed as
EpigenomeEpigenomicsNeural PathwaysAnimalsBrain MappingCerebral CortexFemaleMaleMiceNeurons
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.