Evidence map›Paper›PMID 34614280›Full record

GuidelinePathology international2021

The Japanese Society of Pathology Practical Guidelines on the handling of pathological tissue samples for cancer genomic medicine.

Yutaka Hatanaka, Takeshi Kuwata, Eiichi Morii, Yae Kanai, Hitoshi Ichikawa, Takashi Kubo, Kanako C Hatanaka, Kazuko Sakai, Kazuto Nishio, Satoshi Fujii and 4 more

Abstract readPractice Guideline
In one paragraph

Guideline in Pathology international, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Guideline
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Nationwide survey on HER2 and PD-L1 testing practices in gastric cancer across Japan.Gastric cancer : official journal of the International Gastric Cancer Association and the Japanese Gastric Cancer Association · 2025
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. An approach for improvement of the accuracy of cancer gene panel testing.International journal of clinical oncology · 2024
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Yutaka HatanakaResearch Division of Genome Companion Diagnostics, Hokkaido University Hospital, Hokkaido, Japan.ORCID http://orcid.org/0000-0003-3128-1477
Takeshi KuwataDepartment of Genetic Medicine and Services, National Cancer Center Hospital East, Chiba, Japan.ORCID http://orcid.org/0000-0003-0044-953X
Eiichi MoriiDepartment of Pathology, Osaka University Graduate School of Medicine, Osaka, Japan.
Yae KanaiDepartment of Pathology, Keio University School of Medicine, Tokyo, Japan.
Hitoshi IchikawaDepartment of Clinical Genomics, National Cancer Center Research Institute, Tokyo, Japan.
Takashi KuboDepartment of Clinical Genomics, National Cancer Center Research Institute, Tokyo, Japan.
Kanako C HatanakaCenter for Development of Advanced Diagnostics, Hokkaido University Hospital, Hokkaido, Japan.
Kazuko SakaiDepartment of Genome Biology, Kindai University Faculty of Medicine, Osaka, Japan.
Kazuto NishioDepartment of Genome Biology, Kindai University Faculty of Medicine, Osaka, Japan.
Satoshi FujiiExploratory Oncology Research & Clinical Trial Center, National Cancer Center, Chiba, Japan.
Wataru OkamotoTranslational Research Support Section, National Cancer Center Hospital East, Chiba, Japan.
Takayuki YoshinoDepartment of Gastrointestinal Oncology, National Cancer Center Hospital East, Chiba, Japan.
Atsushi OchiaiExploratory Oncology Research & Clinical Trial Center, National Cancer Center, Chiba, Japan.ORCID http://orcid.org/0000-0001-6857-4009
Yoshinao OdaDepartment of Anatomic Pathology, Pathological Sciences, Graduate School of Medical Sciences, Kyushu University, Fukuoka, Japan.

Funding

AMED 16ck0106232h0001AMED 17ck0106233h0002Health and Labor Sciences Research H26-Policy for Cancer General-005The National Cancer Center Research and Development Fund 28-A-5
6 · The paper itself

Abstract

Clinical cancer genomic testing based on next-generation sequencing can help select genotype-matched therapy and provide diagnostic and prognostic information. Pathological tissue from malignant tumors obtained during routine practice are frequently used for genomic testing. This article is aimed to standardize the proper handling of pathological specimens in practice for genomic medicine based on the findings established in "Guidelines on the handling of pathological tissue samples for genomic medicine (in Japanese)" published by The Japanese Society of Pathology (JSP) in 2018. The two-part practical guidelines are based on empirical data analyses; Part 1 describes the standard preanalytic operating procedures for tissue collection, processing, and storage of formalin-fixed paraffin-embedded (FFPE) samples, while Part 2 describes the assessment and selection of FFPE samples appropriate for genomic testing, typically conducted by a pathologist. The guidelines recommend that FFPE sample blocks be used within 3 years from preparation, and the tumor content should be ≥30% (minimum 20%). The empirical data were obtained from clinical studies performed by the JSP in collaboration with leading Japanese cancer genome research projects. The Japanese Ministry of Health, Labour, and Welfare (MHLW) recommended to comply with the JSP practical guidelines in implementing cancer genomic testing under the national health insurance system in over 200 MHLW-designated core and cooperative cancer genome medicine hospitals in Japan.

Indexed as

Genetic TestingGenomicsHigh-Throughput Nucleotide SequencingHumansJapanNeoplasmsSpecimen HandlingTissue Preservationcancer genomic medicinegene panel testingnext-generation sequencingsample processing

Identifiers

PMID34614280
PMCPMC9292019

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.