Evidence map›Paper›PMID 34614168›Full record

ArticleNucleic acids research2021

Atypical molecular features of RNA silencing against the phloem-restricted polerovirus TuYV.

Marion Clavel, Esther Lechner, Marco Incarbone, Timothée Vincent, Valerie Cognat, Ekaterina Smirnova, Maxime Lecorbeiller, Véronique Brault, Véronique Ziegler-Graff, Pascal Genschik

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
4.4field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
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  9. Review
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  12. The plant siRNA landscape.The Plant cell · 2024
    Review
  13. Infection Defects of RNA and DNA Viruses Induced by Antiviral RNA Interference.Microbiology and molecular biology reviews : MMBR · 2023
    Review
  14. Article
  15. Article
  16. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Marion ClavelInstitut de Biologie Moléculaire des Plantes, CNRS, Université de Strasbourg, Strasbourg, France.ORCID 0000-0003-1322-7362
Esther LechnerInstitut de Biologie Moléculaire des Plantes, CNRS, Université de Strasbourg, Strasbourg, France.
Marco IncarboneInstitut de Biologie Moléculaire des Plantes, CNRS, Université de Strasbourg, Strasbourg, France.ORCID 0000-0002-0677-8505
Timothée VincentInstitut de Biologie Moléculaire des Plantes, CNRS, Université de Strasbourg, Strasbourg, France.
Valerie CognatInstitut de Biologie Moléculaire des Plantes, CNRS, Université de Strasbourg, Strasbourg, France.
Ekaterina SmirnovaInstitut de Biologie Moléculaire des Plantes, CNRS, Université de Strasbourg, Strasbourg, France.
Maxime LecorbeillerInstitut de Biologie Moléculaire des Plantes, CNRS, Université de Strasbourg, Strasbourg, France.
Véronique BraultSVQV, INRA UMR1131, Université de Strasbourg, Colmar, France.
Véronique Ziegler-GraffInstitut de Biologie Moléculaire des Plantes, CNRS, Université de Strasbourg, Strasbourg, France.
Pascal GenschikInstitut de Biologie Moléculaire des Plantes, CNRS, Université de Strasbourg, Strasbourg, France.ORCID 0000-0002-4107-5071
Centre National de la Recherche Scientifique · FRSanté de la Vigne et Qualité du Vin · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In plants and some animal lineages, RNA silencing is an efficient and adaptable defense mechanism against viruses. To counter it, viruses encode suppressor proteins that interfere with RNA silencing. Phloem-restricted viruses are spreading at an alarming rate and cause substantial reduction of crop yield, but how they interact with their hosts at the molecular level is still insufficiently understood. Here, we investigate the antiviral response against phloem-restricted turnip yellows virus (TuYV) in the model plant Arabidopsis thaliana. Using a combination of genetics, deep sequencing, and mechanical vasculature enrichment, we show that the main axis of silencing active against TuYV involves 22-nt vsiRNA production by DCL2, and their preferential loading into AGO1. Moreover, we identify vascular secondary siRNA produced from plant transcripts and initiated by DCL2-processed AGO1-loaded vsiRNA. Unexpectedly, and despite the viral encoded VSR P0 previously shown to mediate degradation of AGO proteins, vascular AGO1 undergoes specific post-translational stabilization during TuYV infection. Collectively, our work uncovers the complexity of antiviral RNA silencing against phloem-restricted TuYV and prompts a re-assessment of the role of its suppressor of silencing P0 during genuine infection.

Indexed as

Amino Acid SequenceArabidopsisArabidopsis ProteinsArgonaute ProteinsCell Cycle ProteinsDisease ResistanceGene Expression RegulationGenes, SuppressorHigh-Throughput Nucleotide SequencingHost-Pathogen InteractionsLuteoviridaePhloemPlant DiseasesRibonuclease IIIRNA InterferenceSequence AlignmentAGO1 protein, ArabidopsisArabidopsis ProteinsArgonaute ProteinsCell Cycle ProteinsDCL2 protein, ArabidopsisRibonuclease IIIViral Proteins

Identifiers

PMID34614168
PMCPMC8565345
OpenAlexW3204855158

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.