Evidence map›Paper›PMID 34611352›Full record

ReviewNature reviews. Genetics2022

Overlapping genes in natural and engineered genomes.

Bradley W Wright, Mark P Molloy, Paul R Jaschke

Abstract readReview
In one paragraph

Review in Nature reviews. Genetics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 78 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
78citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

78 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Review
  4. Article
  5. Decoding the Microcin J25 Biosynthetic Cluster: Modulation of theInternational journal of molecular sciences · 2026
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Strategies for Coexpression of Bilin-Producing Enzymes in Escherichia coli.Methods in molecular biology (Clifton, N.J.) · 2026
    Article
  13. Anticodon Engineered Transfer RNA (tRNAAdvanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025
    Article
  14. Genome synthesis, assembly, and rebooting of therapeutically useful high G+C% mycobacteriophages.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  15. Article
  16. Article
  17. Secure biosystems design inApplied and environmental microbiology · 2025
    Article
  18. ImprovedMicrobial genomics · 2025
    Article
  19. Article
  20. Review

18 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Bradley W WrightDepartment of Molecular Sciences, Macquarie University, Sydney, NSW, Australia.
Mark P MolloyBowel Cancer and Biomarker Laboratory, School of Medical Sciences, The University of Sydney, Sydney, NSW, Australia.ORCID http://orcid.org/0000-0003-4679-5868
Paul R JaschkeDepartment of Molecular Sciences, Macquarie University, Sydney, NSW, Australia. paul.jaschke@mq.edu.au.ORCID http://orcid.org/0000-0003-2359-1301

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Modern genome-scale methods that identify new genes, such as proteogenomics and ribosome profiling, have revealed, to the surprise of many, that overlap in genes, open reading frames and even coding sequences is widespread and functionally integrated into prokaryotic, eukaryotic and viral genomes. In parallel, the constraints that overlapping regions place on genome sequences and their evolution can be harnessed in bioengineering to build more robust synthetic strains and constructs. With a focus on overlapping protein-coding and RNA-coding genes, this Review examines their discovery, topology and biogenesis in the context of their genome biology. We highlight exciting new uses for sequence overlap to control translation, compress synthetic genetic constructs, and protect against mutation.

Indexed as

BioengineeringAnimalsChromosome MappingGenes, OverlappingGenomeHumansOrganisms, Genetically Modified

Identifiers

PMID34611352
PMCPMC8490965

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.