Evidence map›Paper›PMID 34610275›Full record

ArticleCurrent biology : CB2021

Genetic basis for an evolutionary shift from ancestral preaxial to postaxial limb polarity in non-urodele vertebrates.

Anna Trofka, Bau-Lin Huang, Jianjian Zhu, William F Heinz, Valentin Magidson, Yuki Shibata, Yun-Bo Shi, Basile Tarchini, H Scott Stadler, Mirindi Kabangu and 3 more

Open access · bronzeAbstract read
In one paragraph

Article in Current biology : CB, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.7field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Genes · 2023
    Article
  6. Digits in a dish: AnFrontiers in cell and developmental biology · 2023
    Article
  7. Article
  8. Article
  9. HDAC Inhibitor Titration of Transcription and Axolotl Tail Regeneration.Frontiers in cell and developmental biology · 2021
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors at 6 institutions in 1 country.

Anna TrofkaCancer and Developmental Biology Laboratory, Center for Cancer Research, NCI, Frederick, MD, USA.
Bau-Lin HuangCancer and Developmental Biology Laboratory, Center for Cancer Research, NCI, Frederick, MD, USA.
Jianjian ZhuCancer and Developmental Biology Laboratory, Center for Cancer Research, NCI, Frederick, MD, USA.
William F HeinzOptical Microscopy and Analysis Laboratory, Cancer Research Technology Program, Frederick National Laboratory for Cancer Research, Frederick, MD, USA.
Valentin MagidsonOptical Microscopy and Analysis Laboratory, Cancer Research Technology Program, Frederick National Laboratory for Cancer Research, Frederick, MD, USA.
Yuki ShibataLaboratory of Gene Regulation and Development, Eunice Kennedy Shriver NICHD, Bethesda, MD, USA.
Yun-Bo ShiLaboratory of Gene Regulation and Development, Eunice Kennedy Shriver NICHD, Bethesda, MD, USA.
Basile TarchiniThe Jackson Laboratory, Bar Harbor, ME, USA.
H Scott StadlerDivision of Skeletal Biology, Shriners Hospitals for Children, Portland, OR, USA; Department of Orthopaedics and Rehabilitation, Oregon Health & Science University, Portland, OR, USA.
Mirindi KabanguDepartment of Neuroscience, Spinal Cord and Brain Injury Research Center, and Ambystoma Genetic Stock Center, University of Kentucky, Lexington, KY, USA.
Nour W Al Haj BaddarDepartment of Neuroscience, Spinal Cord and Brain Injury Research Center, and Ambystoma Genetic Stock Center, University of Kentucky, Lexington, KY, USA.
S Randal VossDepartment of Neuroscience, Spinal Cord and Brain Injury Research Center, and Ambystoma Genetic Stock Center, University of Kentucky, Lexington, KY, USA. Electronic address: srvoss@uky.edu.
Susan MackemCancer and Developmental Biology Laboratory, Center for Cancer Research, NCI, Frederick, MD, USA. Electronic address: mackems@mail.nih.gov.
Center for Cancer Research · USUniversity of Kentucky · USEunice Kennedy Shriver National Institute of Child Health and Human Development · USFrederick National Laboratory for Cancer Research · USJackson Laboratory · USOregon Health & Science University · US

Funding

WORK ORDER 126643 B539 EXPAND IC SUITE75N91019D00024 · NIAID · LEIDOS BIOMEDICAL RESEARCH, INC. · PI BRISCOE, LYNN · 2019 to 2025
$3932.6M
Late stage signaling centers and Gli3-Hoxd interaction roles in Hedgehog regulated digit morphogenesisZIABC011119 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI MACKEM, SUSAN · 2009 to 2025
$8.9M
Ambystoma Genetic Stock Center - Revision to Include Curation and Informatics ComponentP40OD019794 · OD · UNIVERSITY OF KENTUCKY · PI Stephen Randal Voss · 2015 to 2026
$6.3M
Hoxd gene functions in digit morphogenesis and role of Gli3-Hoxd interactionZ01BC011119 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI MACKEM, SUSAN · 2008 to 2008
$347k
Intramural NIH HHS Z01 BC011119Intramural NIH HHS ZIA BC011119NCI NIH HHS 75N91019D00024NIH HHS P40 OD019794
6 · The paper itself

Abstract

In most tetrapod vertebrates, limb skeletal progenitors condense with postaxial dominance. Posterior elements (such as ulna and fibula) appear prior to their anterior counterparts (radius and tibia), followed by digit-appearance order with continuing postaxial polarity. The only exceptions are urodele amphibians (salamanders), whose limb elements develop with preaxial polarity and who are also notable for their unique ability to regenerate complete limbs as adults. The mechanistic basis for this preaxial dominance has remained an enigma and has even been proposed to relate to the acquisition of novel genes involved in regeneration. However, recent fossil evidence suggests that preaxial polarity represents an ancestral rather than derived state. Here, we report that 5'Hoxd (Hoxd11-d13) gene deletion in mouse is atavistic and uncovers an underlying preaxial polarity in mammalian limb formation. We demonstrate this shift from postaxial to preaxial dominance in mouse results from excess Gli3 repressor (Gli3R) activity due to the loss of 5'Hoxd-Gli3 antagonism and is associated with cell-cycle changes promoting precocious cell-cycle exit in the anterior limb bud. We further show that Gli3 knockdown in axolotl results in a shift to postaxial dominant limb skeleton formation, as well as expanded paddle-shaped limb-bud morphology and ensuing polydactyly. Evolutionary changes in Gli3R activity level, which also played a key role in the fin-to-limb transition, appear to be fundamental to the shift from preaxial to postaxial polarity in formation of the tetrapod limb skeleton.

Indexed as

ExtremitiesLimb BudsAnimalsBiological EvolutionCaudataMammalsMiceTranscription FactorsTranscription Factors5'Hoxd genesaxolotl Gli3 CRISPR knockdownGli3limb axis formation polaritypostaxial limb polarity in mutant axolotlpreaxial limb polarity in mutant micevertebrate limb development

Identifiers

PMID34610275
PMCPMC8612998
OpenAlexW3202558831

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.