Evidence map›Paper›PMID 34609283›Full record

ArticleeLife2021

Unbiased identification of novel transcription factors in striatal compartmentation and striosome maturation.

Maria-Daniela Cirnaru, Sicheng Song, Kizito-Tshitoko Tshilenge, Chuhyon Corwin, Justyna Mleczko, Carlos Galicia Aguirre, Houda Benlhabib, Jaroslav Bendl, Pasha Apontes, John Fullard and 8 more

Open access · goldAbstract read
In one paragraph

Article in eLife, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.5field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 5 institutions in 2 countries.

Maria-Daniela CirnaruDepartment of Neurology, Icahn School of Medicine at Mount Sinai, New York, United States.
Sicheng SongDepartment of Biomedical Informatics and Medical Education, University of Washington, Seattle, United States.
Kizito-Tshitoko TshilengeBuck Institute for Research on Aging, Novato, United States.
Chuhyon CorwinDepartment of Neurology, Icahn School of Medicine at Mount Sinai, New York, United States.
Justyna MleczkoDepartment of Neurology, Icahn School of Medicine at Mount Sinai, New York, United States.
Carlos Galicia AguirreBuck Institute for Research on Aging, Novato, United States.
Houda BenlhabibDepartment of Biomedical Informatics and Medical Education, University of Washington, Seattle, United States.ORCID 0000-0002-7776-1508
Jaroslav BendlPamela Sklar Division of Psychiatric Genomics, Icahn School of Medicine at Mount Sinai, New York, United States.
Pasha ApontesPamela Sklar Division of Psychiatric Genomics, Icahn School of Medicine at Mount Sinai, New York, United States.
John FullardPamela Sklar Division of Psychiatric Genomics, Icahn School of Medicine at Mount Sinai, New York, United States.
Jordi Creus-MuncunillDepartment of Neurology, Icahn School of Medicine at Mount Sinai, New York, United States.
Azadeh ReyahiDepartment of Chemistry and Molecular Biology, University of Gothenburg, Gothenburg, Sweden.
Ali M NikDepartment of Chemistry and Molecular Biology, University of Gothenburg, Gothenburg, Sweden.
Peter CarlssonDepartment of Chemistry and Molecular Biology, University of Gothenburg, Gothenburg, Sweden.
Panos RoussosPamela Sklar Division of Psychiatric Genomics, Icahn School of Medicine at Mount Sinai, New York, United States.
Sean D MooneyDepartment of Biomedical Informatics and Medical Education, University of Washington, Seattle, United States.
Lisa M EllerbyBuck Institute for Research on Aging, Novato, United States.ORCID 0000-0002-9050-7977
Michelle E EhrlichDepartment of Neurology, Icahn School of Medicine at Mount Sinai, New York, United States.ORCID 0000-0001-9397-686X
Icahn School of Medicine at Mount Sinai · USBuck Institute for Research on Aging · USUniversity of Gothenburg · SEUniversity of Washington Medical Center · USMental Illness Research, Education and Clinical Centers · US

Funding

University of Washington Biomedical Informatics and Data Science Research Training ProgramT15LM007442 · NLM · UNIVERSITY OF WASHINGTON · PI JOHN H. GENNARI, Andrea L. Hartzler · 2002 to 2026
$19.6M
Identifying Factors Regulating Medium Spiny Neuron Differentiation or Maintenance as Therapeutic Targets for Huntington's Disease using Induced Pluripotent Stem CellsR01NS100529 · NINDS · BUCK INSTITUTE FOR RESEARCH ON AGING · PI Lisa M Ellerby · 2016 to 2026
$5.6M
NINDS NIH HHS R01 NS100529NLM NIH HHS T15 LM007442
6 · The paper itself

Abstract

Many diseases are linked to dysregulation of the striatum. Striatal function depends on neuronal compartmentation into striosomes and matrix. Striatal projection neurons are GABAergic medium spiny neurons (MSNs), subtyped by selective expression of receptors, neuropeptides, and other gene families. Neurogenesis of the striosome and matrix occurs in separate waves, but the factors regulating compartmentation and neuronal differentiation are largely unidentified. We performed RNA- and ATAC-seq on sorted striosome and matrix cells at postnatal day 3, using the

Indexed as

AnimalsCell DifferentiationCells, CulturedFemaleHumansMiceNeostriatumNeuronsTranscription FactorsTranscription Factorsdevelopmental biologyFoxf2mouseneuroscienceNr4a1Olig2striatumStriosometranscription factors

Identifiers

PMID34609283
PMCPMC8492065
OpenAlexW3201863163

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.