Evidence map›Paper›PMID 34608963›Full record

ArticlePlant physiology2021

Resources for image-based high-throughput phenotyping in crops and data sharing challenges.

Monica F Danilevicz, Philipp E Bayer, Benjamin J Nestor, Mohammed Bennamoun, David Edwards

Abstract read
In one paragraph

Article in Plant physiology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Review
  6. Deep learning in plant phenotyping: the first ten years.Plant phenomics (Washington, D.C.) · 2025
    Review
  7. Review
  8. Review
  9. Article
  10. Review
  11. Article
  12. Review
  13. Review
  14. Article
  15. Review
  16. Biotechnological Advances to Improve Abiotic Stress Tolerance in Crops.International journal of molecular sciences · 2022
    Review
  17. Review
  18. Review
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Monica F DanileviczSchool of Biological Sciences and Institute of Agriculture, University of Western Australia, Perth, Western Australia 6009, Australia.ORCID 0000-0001-7599-8184
Philipp E BayerSchool of Biological Sciences and Institute of Agriculture, University of Western Australia, Perth, Western Australia 6009, Australia.ORCID 0000-0001-8530-3067
Benjamin J NestorSchool of Biological Sciences and Institute of Agriculture, University of Western Australia, Perth, Western Australia 6009, Australia.ORCID 0000-0001-7814-2867
Mohammed BennamounDepartment of Computer Science and Software Engineering, University of Western Australia, Perth, Western Australia 6009, Australia.ORCID 0000-0002-6603-3257
David EdwardsSchool of Biological Sciences and Institute of Agriculture, University of Western Australia, Perth, Western Australia 6009, Australia.ORCID 0000-0001-7599-6760

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

High-throughput phenotyping (HTP) platforms are capable of monitoring the phenotypic variation of plants through multiple types of sensors, such as red green and blue (RGB) cameras, hyperspectral sensors, and computed tomography, which can be associated with environmental and genotypic data. Because of the wide range of information provided, HTP datasets represent a valuable asset to characterize crop phenotypes. As HTP becomes widely employed with more tools and data being released, it is important that researchers are aware of these resources and how they can be applied to accelerate crop improvement. Researchers may exploit these datasets either for phenotype comparison or employ them as a benchmark to assess tool performance and to support the development of tools that are better at generalizing between different crops and environments. In this review, we describe the use of image-based HTP for yield prediction, root phenotyping, development of climate-resilient crops, detecting pathogen and pest infestation, and quantitative trait measurement. We emphasize the need for researchers to share phenotypic data, and offer a comprehensive list of available datasets to assist crop breeders and tool developers to leverage these resources in order to accelerate crop breeding.

Indexed as

PhenotypeCrops, AgriculturalGenomicsHigh-Throughput Screening AssaysInformation DisseminationPlant Breeding

Identifiers

PMID34608963
PMCPMC8561249

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.