Evidence map›Paper›PMID 34608958›Full record

ArticlePlant physiology2021

Catalytic promiscuity of rice 2-oxoglutarate/Fe(II)-dependent dioxygenases supports xenobiotic metabolism.

Natsuki Takamura, Akihiko Yamazaki, Nozomi Sakuma, Sakiko Hirose, Motonari Sakai, Yukie Takani, Satoshi Yamashita, Masahiro Oshima, Makoto Kuroki, Yuzuru Tozawa

Open access · bronzeAbstract read
In one paragraph

Article in Plant physiology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.3field-weighted citation impact, top 51% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. An artificially evolved gene for herbicide-resistant rice breeding.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  3. Review
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

Natsuki TakamuraGraduate School of Science and Engineering, Saitama University, Saitama, 338-8570, Japan.
Akihiko YamazakiTsukuba Research & Technology Center, SDS Biotech K.K., Tsukuba, 300-2646, Japan.
Nozomi SakumaGraduate School of Science and Engineering, Saitama University, Saitama, 338-8570, Japan.
Sakiko HiroseInstitute of Agrobiological Sciences, National Agriculture and Food Research Organization, Tsukuba, 305-8634, Japan.
Motonari SakaiTsukuba Research & Technology Center, SDS Biotech K.K., Tsukuba, 300-2646, Japan.
Yukie TakaniGraduate School of Science and Engineering, Saitama University, Saitama, 338-8570, Japan.
Satoshi YamashitaGraduate School of Natural Science and Technology, Kanazawa University, Kakuma, 920-1192, Japan.
Masahiro OshimaInstitute of Agrobiological Sciences, National Agriculture and Food Research Organization, Tsukuba, 305-8634, Japan.
Makoto KurokiInstitute of Crop Science, National Agriculture and Food Research Organization, Tsukuba, 305-8518, Japan.
Yuzuru TozawaGraduate School of Science and Engineering, Saitama University, Saitama, 338-8570, Japan.ORCID 0000-0002-3885-1105
Saitama University · JPNational Agriculture and Food Research Organization · JPSDS Biotech (Japan) · JPKanazawa University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The rice (Oryza sativa) 2-oxoglutarate (2OG)/Fe(II)-dependent dioxygenase HIS1 mediates the catalytic inactivation of five distinct β-triketone herbicides (bTHs). By assessing the effects of plant growth regulators on HIS1 enzyme function, we found that HIS1 mediates the hydroxylation of trinexapac-ethyl (TE) in the presence of Fe2+ and 2OG. TE blocks gibberellin biosynthesis, and we observed that its addition to culture medium induced growth retardation of rice seedlings in a concentration-dependent manner. Similar treatment with hydroxylated TE revealed that hydroxylation greatly attenuated the inhibitory effect of TE on plant growth. Forced expression of HIS1 in a rice his1 mutant also reduced its sensitivity to TE compared with that of the nontransformant. These results indicate that HIS1 metabolizes TE and thereby markedly reduces its ability to slow plant growth. Furthermore, analysis of five rice HIS1-like (HSL) proteins revealed that OsHSL2 and OsHSL4 also metabolize TE in vitro. HSLs from wheat (Triticum aestivum) and barley (Hordeum vulgare) also showed such activity. In contrast, OsHSL1, which shares the highest amino acid sequence identity with HIS1 and metabolizes the bTH tefuryltrione, did not manifest TE-metabolizing activity. Site-directed mutagenesis of OsHSL1 informed by structural models showed that substitution of three amino acids with the corresponding residues of HIS1 conferred TE-metabolizing activity similar to that of HIS1. Our results thus reveal a catalytic promiscuity of HIS1 and its related enzymes that support xenobiotic metabolism in plants.

Indexed as

CyclopropanesDioxygenasesOryzaPlant ProteinsQuinonesXenobioticsCyclopropanesDioxygenasesPlant ProteinsQuinonestrinexapac-ethylXenobiotics

Identifiers

PMID34608958
PMCPMC8491036
OpenAlexW3176511695

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.