Evidence map›Paper›PMID 34608956›Full record

ArticlePlant physiology2021

Improved virus-induced gene silencing allows discovery of a serpentine synthase gene in Catharanthus roseus.

Kotaro Yamamoto, Dagny Grzech, Konstantinos Koudounas, Emily Amor Stander, Lorenzo Caputi, Tetsuro Mimura, Vincent Courdavault, Sarah E O'Connor

Open access · hybridAbstract read
In one paragraph

Article in Plant physiology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
2.4field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 41 citations in OpenAlex.

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  9. Oxidative Rearrangements of the Alkaloid Intermediate Geissoschizine.Angewandte Chemie (International ed. in English) · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 3 countries.

Kotaro YamamotoDepartment of Natural Product Biosynthesis, Max Planck Institute for Chemical Ecology, Jena 07745, Germany.ORCID 0000-0003-3817-333X
Dagny GrzechDepartment of Natural Product Biosynthesis, Max Planck Institute for Chemical Ecology, Jena 07745, Germany.ORCID 0000-0001-5575-2582
Konstantinos KoudounasEA2106 "Biomolécules et Biotechnologies Végétales", Université de Tours, Tours 37200, France.ORCID 0000-0002-6000-6565
Emily Amor StanderEA2106 "Biomolécules et Biotechnologies Végétales", Université de Tours, Tours 37200, France.ORCID 0000-0002-8382-0631
Lorenzo CaputiDepartment of Natural Product Biosynthesis, Max Planck Institute for Chemical Ecology, Jena 07745, Germany.
Tetsuro MimuraDepartment of Biology, Graduate School of Science, Kobe University, Kobe, Hyogo 657-8501, Japan.
Vincent CourdavaultEA2106 "Biomolécules et Biotechnologies Végétales", Université de Tours, Tours 37200, France.ORCID 0000-0001-8902-4532
Sarah E O'ConnorDepartment of Natural Product Biosynthesis, Max Planck Institute for Chemical Ecology, Jena 07745, Germany.ORCID 0000-0003-0356-6213
Max Planck Institute for Chemical Ecology · DEUniversité de Tours · FRChiba University · JPKobe University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Specialized metabolites are chemically complex small molecules with a myriad of biological functions. To investigate plant-specialized metabolite biosynthesis more effectively, we developed an improved method for virus-induced gene silencing (VIGS). We designed a plasmid that incorporates fragments of both the target gene and knockdown marker gene (phytoene desaturase, PDS), which identifies tissues that have been successfully silenced in planta. To demonstrate the utility of this method, we used the terpenoid indole alkaloid (TIA) pathway in Madagascar periwinkle (Catharanthus roseus) as a model system. Catharanthus roseus is a medicinal plant well known for producing many bioactive compounds, such as vinblastine and vincristine. Our VIGS method enabled the discovery of a previously unknown biosynthetic enzyme, serpentine synthase (SS). This enzyme is a cytochrome P450 (CYP) that produces the β-carboline alkaloids serpentine and alstonine, compounds with strong blue autofluorescence and potential pharmacological activity. The discovery of this enzyme highlights the complexity of TIA biosynthesis and demonstrates the utility of this improved VIGS method for discovering unidentified metabolic enzymes in plants.

Indexed as

CatharanthusGene SilencingGenes, PlantOxidoreductasesPlant ProteinsSecologanin Tryptamine AlkaloidsSignal TransductionOxidoreductasesphytoene dehydrogenasePlant ProteinsSecologanin Tryptamine Alkaloidsserpentine (alkaloid)

Identifiers

PMID34608956
PMCPMC8491018
OpenAlexW3176696852

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.