Evidence map›Paper›PMID 34606654›Full record

ArticleMolecular microbiology2021

Phase-variable expression of pdcB, a phosphodiesterase, influences sporulation in Clostridioides difficile.

Babita Adhikari Dhungel, Revathi Govind

Abstract read
In one paragraph

Article in Molecular microbiology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed.

  1. A programmed reset mechanism primesScience advances · 2026
    Article
  2. Phase variable colony morphotypes ofInfection and immunity · 2026
    Article
  3. Article
  4. Article
  5. Contact dependent suppression ofbioRxiv : the preprint server for biology · 2026
    Article
  6. Phase variable colony morphotypes ofbioRxiv : the preprint server for biology · 2026
    Article
  7. Article
  8. Unique growth and morphology properties of Clade 5bioRxiv : the preprint server for biology · 2025
    Article
  9. Article
  10. Review
  11. Review
  12. Article
  13. Clostridioides difficile Sporulation.Advances in experimental medicine and biology · 2024
    Review
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Review
  20. Regulation of Clostridioides difficile toxin production.Current opinion in microbiology · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Babita Adhikari DhungelDivision of Biology, Kansas State University, Manhattan, Kansas, USA.
Revathi GovindDivision of Biology, Kansas State University, Manhattan, Kansas, USA.ORCID 0000-0001-6609-8600

Funding

Alternate roles of Clostridium difficile TcdRR15AI122173 · NIAID · KANSAS STATE UNIVERSITY · PI GOVIND, REVATHI · 2016 to 2016
$437k
Regulatory mechanisms controlling TcdE production in Clostridium difficileR03AI135762 · NIAID · KANSAS STATE UNIVERSITY · PI GOVIND, REVATHI · 2018 to 2019
$152k
NIAID NIH HHS R03 AI135762NIAID NIH HHS R15 AI122173
6 · The paper itself

Abstract

Clostridioides difficile is the causative agent of antibiotic-associated diarrhea and is the leading cause of nosocomial infection in developed countries. An increasing number of C. difficile infections are attributed to epidemic strains that produce more toxins and spores. C. difficile spores are the major factor for the transmission and persistence of the organism. Previous studies have identified global regulators that influence sporulation in C. difficile. This study discovers that PdcB, a phosphodiesterase, enhances sporulation in C. difficile strain UK1. Through genetic and biochemical assays, we show that phase-variable expression of pdcB results in hypo- and hyper-sporulation phenotypes. In the "ON" orientation, the identified promotor is in the right orientation to drive the expression of pdcB. Production of the PdcB phosphodiesterase reduces the intracellular cyclic-di-GMP (c-di-GMP) concentration, resulting in a hyper-sporulation phenotype. Loss of PdcB due to the pdcB promoter being in the OFF orientation or mutation of pdcB results in increased c-di-GMP levels and a hypo-sporulation phenotype. Additionally, we demonstrate that CodY binds to the upstream region of pdcB. DNA inversion reorients the CodY binding site so that in the OFF orientation, CodY binds a site that is upstream of the pdcB promoter and can further repress gene expression.

Indexed as

Bacterial ProteinsClostridioides difficileClostridium InfectionsCyclic GMPGene Expression Regulation, BacterialMutationPhosphoric Diester HydrolasesPromoter Regions, GeneticSpores, BacterialTranscription FactorsBacterial Proteinsbis(3',5')-cyclic diguanylic acidCyclic GMPPhosphoric Diester HydrolasesTranscription FactorsClostridioides difficilegene regulationphase variation

Identifiers

PMID34606654
PMCPMC8876291

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.