Evidence map›Paper›PMID 34605540›Full record

ArticleThe Biochemical journal2021

BACH1, the master regulator of oxidative stress, has a dual effect on CFTR expression.

Monali NandyMazumdar, Alekh Paranjapye, James Browne, Shiyi Yin, Shih-Hsing Leir, Ann Harris

Open access · hybridAbstract read
In one paragraph

Article in The Biochemical journal, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
2.3field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Review
  6. Article
  7. Article
  8. Article
  9. Review
  10. Review
  11. Article
  12. Tissue-Specific Regulation ofInternational journal of molecular sciences · 2023
    Review
  13. Article
  14. Cellular heterogeneity in the 16HBE14oPhysiological reports · 2023
    Article
  15. Cystic Fibrosis and Oxidative Stress: The Role of CFTR.Molecules (Basel, Switzerland) · 2022
    Review
  16. Article
  17. CFTR and Gastrointestinal Cancers: An Update.Journal of personalized medicine · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Monali NandyMazumdarDepartment of Genetics and Genome Sciences, Case Western Reserve University, Cleveland, OH 44116, U.S.A.ORCID 0000-0002-2371-6058
Alekh ParanjapyeDepartment of Genetics and Genome Sciences, Case Western Reserve University, Cleveland, OH 44116, U.S.A.ORCID 0000-0002-4069-1761
James BrowneDepartment of Genetics and Genome Sciences, Case Western Reserve University, Cleveland, OH 44116, U.S.A.ORCID 0000-0002-6473-3567
Shiyi YinDepartment of Genetics and Genome Sciences, Case Western Reserve University, Cleveland, OH 44116, U.S.A.
Shih-Hsing LeirDepartment of Genetics and Genome Sciences, Case Western Reserve University, Cleveland, OH 44116, U.S.A.ORCID 0000-0001-9524-3379
Ann HarrisDepartment of Genetics and Genome Sciences, Case Western Reserve University, Cleveland, OH 44116, U.S.A.ORCID 0000-0002-6541-2546
Case Western Reserve University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The cystic fibrosis transmembrane conductance regulator (CFTR) gene lies within a topologically associated domain (TAD) in which multiple cis-regulatory elements (CREs) and transcription factors (TFs) regulate its cell-specific expression. The CREs are recruited to the gene promoter by a looping mechanism that depends upon both architectural proteins and specific TFs. An siRNA screen to identify TFs coordinating CFTR expression in airway epithelial cells suggested an activating role for BTB domain and CNC homolog 1 (BACH1). BACH1 is a ubiquitous master regulator of the cellular response to oxidative stress. Here, we show that BACH1 may have a dual effect on CFTR expression by direct occupancy of CREs at physiological oxygen (∼8%), while indirectly modulating expression under conditions of oxidative stress. Hence BACH1, can activate or repress the same gene, to fine tune expression in response to environmental cues such as cell stress. Furthermore, our 4C-seq data suggest that BACH1 can also directly regulate CFTR gene expression by modulating locus architecture through occupancy at known enhancers and structural elements, and depletion of BACH1 alters the higher order chromatin structure.

Indexed as

Gene Expression RegulationBasic-Leucine Zipper Transcription FactorsCell Line, TumorCell ProliferationCystic Fibrosis Transmembrane Conductance RegulatorEpithelial CellsGene Expression ProfilingGlutamate-Cysteine LigaseGlutathioneHeme Oxygenase-1HumansHydrogen PeroxideNF-E2-Related Factor 2Oxidative StressOxygenPromoter Regions, GeneticBACH1 protein, humanBasic-Leucine Zipper Transcription FactorsCFTR protein, humanCystic Fibrosis Transmembrane Conductance RegulatorGCLM protein, humanGlutamate-Cysteine LigaseGlutathioneHeme Oxygenase-1HMOX1 protein, humanHydrogen PeroxideNFE2L2 protein, humanNF-E2-Related Factor 2OxygenRNA, Small Interferingchromatin structurecystic fibrosis transmembrane conductance regulatorepithelial functionoxidative stressregulation of gene expressiontranscription factors

Identifiers

PMID34605540
PMCPMC8589331
OpenAlexW3201984768

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.