Evidence map›Paper›PMID 34605051›Full record

ArticleThe EMBO journal2021

Epistasis, aneuploidy, and functional mutations underlie evolution of resistance to induced microtubule depolymerization.

Mattia Pavani, Paolo Bonaiuti, Elena Chiroli, Fridolin Gross, Federica Natali, Francesca Macaluso, Ádám Póti, Sebastiano Pasqualato, Zoltán Farkas, Simone Pompei and 4 more

Open access · greenAbstract read
In one paragraph

Article in The EMBO journal, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.6field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 19 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Experimental evolution for cell biology.Trends in cell biology · 2023
    Review
  7. Article
  8. Article
  9. Long-term evolution of proliferating cells using the eVOLVER platform.bioRxiv : the preprint server for biology · 2023
    Article
  10. Article
  11. A fitness trade-off explains the early fate of yeast aneuploids with chromosome gains.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 3 countries.

Mattia PavaniIFOM, The Firc Institute of Molecular Oncology, Milano, Italy.ORCID 0000-0003-1652-0038
Paolo BonaiutiIFOM, The Firc Institute of Molecular Oncology, Milano, Italy.ORCID 0000-0002-4446-9682
Elena ChiroliIFOM, The Firc Institute of Molecular Oncology, Milano, Italy.ORCID 0000-0001-8668-0657
Fridolin GrossIFOM, The Firc Institute of Molecular Oncology, Milano, Italy.ORCID 0000-0003-4964-8062
Federica NataliInstitute of Medical Biology (IMB), Agency for Science, Technology and Research (A*STAR), Singapore, Singapore.ORCID 0000-0001-7388-4570
Francesca MacalusoIFOM, The Firc Institute of Molecular Oncology, Milano, Italy.ORCID 0000-0002-1924-3761
Ádám PótiInstitute of Enzymology, Research Centre for Natural Sciences, Budapest, Hungary.
Sebastiano PasqualatoIEO, European Institute of Oncology IRCCS, Milan, Italy.ORCID 0000-0002-9038-7768
Zoltán FarkasSynthetic and Systems Biology Unit, Institute of Biochemistry, Biological Research Centre, Szeged, Hungary.ORCID 0000-0002-5085-3306
Simone PompeiIFOM, The Firc Institute of Molecular Oncology, Milano, Italy.ORCID 0000-0002-6673-7991
Marco Cosentino LagomarsinoIFOM, The Firc Institute of Molecular Oncology, Milano, Italy.ORCID 0000-0003-0235-0445
Giulia RancatiInstitute of Medical Biology (IMB), Agency for Science, Technology and Research (A*STAR), Singapore, Singapore.ORCID 0000-0003-0835-0139
Dávid SzütsInstitute of Enzymology, Research Centre for Natural Sciences, Budapest, Hungary.ORCID 0000-0001-7985-0136
Andrea CilibertoIFOM, The Firc Institute of Molecular Oncology, Milano, Italy.ORCID 0000-0001-6078-8600
IFOM · ITAgency for Science, Technology and Research · SGInstitute of Molecular Life Sciences · HUHuman Technopole · ITHUN-REN Szegedi Biológiai Kutatóközpont · HU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cells with blocked microtubule polymerization are delayed in mitosis, but eventually manage to proliferate despite substantial chromosome missegregation. While several studies have analyzed the first cell division after microtubule depolymerization, we have asked how cells cope long-term with microtubule impairment. We allowed 24 clonal populations of yeast cells with beta-tubulin mutations preventing proper microtubule polymerization, to evolve for ˜150 generations. At the end of the laboratory evolution experiment, cells had regained the ability to form microtubules and were less sensitive to microtubule-depolymerizing drugs. Whole-genome sequencing identified recurrently mutated genes, in particular for tubulins and kinesins, as well as pervasive duplication of chromosome VIII. Recreating these mutations and chromosome VIII disomy prior to evolution confirmed that they allow cells to compensate for the original mutation in beta-tubulin. Most of the identified mutations did not abolish function, but rather restored microtubule functionality. Analysis of the temporal order of resistance development in independent populations repeatedly revealed the same series of events: disomy of chromosome VIII followed by a single additional adaptive mutation in either tubulins or kinesins. Since tubulins are highly conserved among eukaryotes, our results have implications for understanding resistance to microtubule-targeting drugs widely used in cancer therapy.

Indexed as

Epistasis, GeneticMutationAdaptation, BiologicalAneuploidyChromosomes, FungalGene Expression Regulation, FungalMicrotubulesPolymerizationSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsWhole Genome SequencingSaccharomyces cerevisiae ProteinsTub2 protein, S cerevisiaechromosome segregationlaboratory evolutionmicrotubule dynamicsresistance to antimitotics

Identifiers

PMID34605051
PMCPMC8591535
OpenAlexW3203911856

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.