Evidence map›Paper›PMID 34601763›Full record

ArticleProtein science : a publication of the Protein Society2021

Differences in the dynamics of the tandem-SH2 modules of the Syk and ZAP-70 tyrosine kinases.

Helen T Hobbs, Neel H Shah, Jean M Badroos, Christine L Gee, Susan Marqusee, John Kuriyan

Open access · hybridAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 25 citations in OpenAlex.

  1. Conformational dynamics in insulin receptor kinase reveal a type III allosteric pocket.Protein science : a publication of the Protein Society · 2026
    Article
  2. Review
  3. Review
  4. An electrostatic network with strong connectivity is a phospho-sensor for regulating affinity of Syk-receptor association.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  5. The structural influence of the oncogenic driver mutation N642H in the STAT5B SH2 domain.Protein science : a publication of the Protein Society · 2025
    Article
  6. Article
  7. Article
  8. Review
  9. Review
  10. Review
  11. Review
  12. Article
  13. Saturation mutagenesis of a predicted ancestral Syk-family kinase.Protein science : a publication of the Protein Society · 2022
    Article
  14. Review
  15. Differences in the dynamics of the tandem-SH2 modules of the Syk and ZAP-70 tyrosine kinases.Protein science : a publication of the Protein Society · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Helen T HobbsDepartment of Chemistry, University of California, Berkeley, California, USA.ORCID 0000-0002-4789-0608
Neel H ShahCalifornia Institute for Quantitative Biosciences, University of California, Berkeley, California, USA.
Jean M BadroosDepartment of Molecular and Cell Biology, University of California, Berkeley, California, USA.
Christine L GeeCalifornia Institute for Quantitative Biosciences, University of California, Berkeley, California, USA.ORCID 0000-0002-2632-6418
Susan MarquseeDepartment of Chemistry, University of California, Berkeley, California, USA.ORCID 0000-0001-7648-2163
John KuriyanDepartment of Chemistry, University of California, Berkeley, California, USA.
QB3 · USUniversity of California, Berkeley · US

Funding

Understand the metabolic fitness of naïve T cellsP01AI091580 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI ARTHUR WEISS · 2011 to 2026
$31.1M
User Training and OutreachP30GM124169 · NIGMS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI PAUL David ADAMS, Gregory L Hura · 2017 to 2026
$28.6M
MOLECULAR BIOPHYSICS TRAINING GRANTT32GM008295 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI HURLEY, JAMES H, WEMMER, DAVID E · 1989 to 2022
$8.1M
Sequence and Environmental Determinants of the Protein Energy LandscapeR01GM050945 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI MARQUSEE, SUSAN · 1999 to 2022
$7.4M
Howard Hughes Medical InstituteNIAID NIH HHS P01 AI091580NIGMS NIH HHS P30 GM124169NIGMS NIH HHS R01 GM050945NIGMS NIH HHS T32 GM008295
6 · The paper itself

Abstract

The catalytic activity of Syk-family tyrosine kinases is regulated by a tandem Src homology 2 module (tSH2 module). In the autoinhibited state, this module adopts a conformation that stabilizes an inactive conformation of the kinase domain. The binding of the tSH2 module to phosphorylated immunoreceptor tyrosine-based activation motifs necessitates a conformational change, thereby relieving kinase inhibition and promoting activation. We determined the crystal structure of the isolated tSH2 module of Syk and find, in contrast to ZAP-70, that its conformation more closely resembles that of the peptide-bound state, rather than the autoinhibited state. Hydrogen-deuterium exchange by mass spectrometry, as well as molecular dynamics simulations, reveal that the dynamics of the tSH2 modules of Syk and ZAP-70 differ, with most of these differences occurring in the C-terminal SH2 domain. Our data suggest that the conformational landscapes of the tSH2 modules in Syk and ZAP-70 have been tuned differently, such that the autoinhibited conformation of the Syk tSH2 module is less stable. This feature of Syk likely contributes to its ability to more readily escape autoinhibition when compared to ZAP-70, consistent with tighter control of downstream signaling pathways in T cells.

Indexed as

Molecular Dynamics SimulationAdaptive ImmunityAnimalsBinding SitesBiological EvolutionB-LymphocytesCloning, MolecularCrystallography, X-RayDeuterium Exchange MeasurementEscherichia coliGene ExpressionGenetic VectorsHumansProtein BindingProtein Conformation, alpha-HelicalProtein Conformation, beta-StrandRecombinant ProteinsSyk KinaseSYK protein, humanZAP70 protein, humanZAP-70 Protein-Tyrosine Kinaseconformational landscapeevolutionhydrogen-deuterium exchange mass spectrometryprotein dynamicstyrosine kinase signaling

Identifiers

PMID34601763
PMCPMC8605373
OpenAlexW3201962066

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.