Evidence map›Paper›PMID 34599827›Full record

ArticleProteins2022

Unique features of different classes of G-protein-coupled receptors revealed from sequence coevolutionary and structural analysis.

Hung N Do, Allan Haldane, Ronald M Levy, Yinglong Miao

Abstract read
In one paragraph

Article in Proteins, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. GPCR Sense Communication Among Interaction Nematodes with Other Organisms.International journal of molecular sciences · 2025
    Review
  5. Article
  6. Protons taken hostage: Dynamic H-bond networks of the pH-sensing GPR68.Computational and structural biotechnology journal · 2023
    Article
  7. Review
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Hung N DoThe Center for Computational Biology and Department of Molecular Biosciences, The University of Kansas, Lawrence, Kansas, USA.
Allan HaldaneDepartment of Physics and Chemistry, Center for Biophysics and Computational Biology, Temple University, Philadelphia, Pennsylvania, USA.
Ronald M LevyDepartment of Chemistry, Center for Biophysics and Computational Biology, Temple University, Philadelphia, Pennsylvania, USA.
Yinglong MiaoThe Center for Computational Biology and Department of Molecular Biosciences, The University of Kansas, Lawrence, Kansas, USA.ORCID 0000-0003-3714-1395

Funding

X-ray Crystallographic Fragment Screening CoreU54AI150472 · NIAID · SEATTLE CHILDREN'S HOSPITAL · PI OLSON, ARTHUR J. · 2019 to 2021
$15.7M
Mapping Fitness & Free Energy Landscapes of ProteinsR35GM132090 · NIGMS · TEMPLE UNIV OF THE COMMONWEALTH · PI Ronald Levy · 2019 to 2026
$3.2M
Enhanced Sampling of G-Protein-Coupled Receptor-G Protein InteractionsR01GM132572 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI MIAO, YINGLONG · 2019 to 2023
$1.5M
American Heart Association-American Stroke Association 17SDG33370094NIAID NIH HHS U54 AI150472NIGMS NIH HHS R01 GM132572NIGMS NIH HHS R35 GM132090
6 · The paper itself

Abstract

G-protein-coupled receptors (GPCRs) are the largest family of human membrane proteins and represent the primary targets of about one third of currently marketed drugs. Despite the critical importance, experimental structures have been determined for only a limited portion of GPCRs and functional mechanisms of GPCRs remain poorly understood. Here, we have constructed novel sequence coevolutionary models of the A and B classes of GPCRs and compared them with residue contact frequency maps generated with available experimental structures. Significant portions of structural residue contacts were successfully detected in the sequence-based covariational models. "Exception" residue contacts predicted from sequence coevolutionary models but not available structures added missing links that were important for GPCR activation and allosteric modulation. Moreover, we identified distinct residue contacts involving different sets of functional motifs for GPCR activation, such as the Na

Indexed as

Receptors, G-Protein-CoupledHumansLigandsLigandsReceptors, G-Protein-Coupledactivationallosteric modulationG-protein-coupled receptorssequence coevolutionstructural contacts

Identifiers

PMID34599827
PMCPMC8738117

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.