Evidence map›Paper›PMID 34599242›Full record

ArticleScientific reports2021

Viral detection and identification in 20 min by rapid single-particle fluorescence in-situ hybridization of viral RNA.

Christof Hepp, Nicolas Shiaelis, Nicole C Robb, Alison Vaughan, Philippa C Matthews, Nicole Stoesser, Derrick Crook, Achillefs N Kapanidis

Abstract read
In one paragraph

Article in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Review
  13. Review
  14. Virus morphology: Insights from super-resolution fluorescence microscopy.Biochimica et biophysica acta. Molecular basis of disease · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Christof HeppBiological Physics Research Group, Clarendon Laboratory, Department of Physics, University of Oxford, Oxford, OX1 3PU, UK. christof.hepp@physics.ox.ac.uk.
Nicolas ShiaelisBiological Physics Research Group, Clarendon Laboratory, Department of Physics, University of Oxford, Oxford, OX1 3PU, UK.
Nicole C RobbBiological Physics Research Group, Clarendon Laboratory, Department of Physics, University of Oxford, Oxford, OX1 3PU, UK.
Alison VaughanNuffield Department for Medicine, University of Oxford, Oxford, OX3 9DU, UK.
Philippa C MatthewsNuffield Department for Medicine, University of Oxford, Oxford, OX3 9DU, UK.
Nicole StoesserNuffield Department for Medicine, University of Oxford, Oxford, OX3 9DU, UK.
Derrick CrookNuffield Department for Medicine, University of Oxford, Oxford, OX3 9DU, UK.
Achillefs N KapanidisBiological Physics Research Group, Clarendon Laboratory, Department of Physics, University of Oxford, Oxford, OX1 3PU, UK. kapanidis@physics.ox.ac.uk.

Funding

Biotechnology and Biological Sciences Research Council BB/V001868/1Medical Research Council MR/N010744/1Wellcome TrustWellcome Trust 110164/Z/15/Z
6 · The paper itself

Abstract

The increasing risk from viral outbreaks such as the ongoing COVID-19 pandemic exacerbates the need for rapid, affordable and sensitive methods for virus detection, identification and quantification; however, existing methods for detecting virus particles in biological samples usually depend on multistep protocols that take considerable time to yield a result. Here, we introduce a rapid fluorescence in situ hybridization (FISH) protocol capable of detecting influenza virus, avian infectious bronchitis virus and SARS-CoV-2 specifically and quantitatively in approximately 20 min, in virus cultures, combined nasal and throat swabs with added virus and likely patient samples without previous purification. This fast and facile workflow can be adapted both as a lab technique and a future diagnostic tool in enveloped viruses with an accessible genome.

Indexed as

In Situ Hybridization, FluorescenceRNA, ViralVirusesRNA, Viral

Identifiers

PMID34599242
PMCPMC8486776

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.