Evidence map›Paper›PMID 34599228›Full record

ArticleScientific reports2021

Analyses of nicotine metabolism biomarker genetics stratified by sex in African and European Americans.

Meghan J Chenoweth, Lisa Sanderson Cox, Nikki L Nollen, Jasjit S Ahluwalia, Neal L Benowitz, Caryn Lerman, Jo Knight, Rachel F Tyndale

2 registry-linked trialsOpen access · goldAbstract read
In one paragraph

Article in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to 2 registered trials, which are not on this map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT00666978 phase4completednot on this map

Enhancing Tobacco Use Treatment for African American Light Smokers

TypeinterventionalSponsorLisa Sanderson Cox, PhDRan2007 to 2010Enrolled540ConditionsBladder Cancer, Cervical Cancer, Esophageal Cancer, Gastric CancerArmssmoking cessation intervention, bupropion hydrochloride, gene expression analysis, polymerase chain reaction, counseling intervention
NCT01314001 phase3completednot on this map

Pharmacogenetics of Nicotine Addiction Treatment (PNAT)

TypeinterventionalSponsorUniversity of PennsylvaniaRan2010 to 2014Enrolled1,246ConditionsNicotine AddictionArmsVarenicline, Placebo, Transdermal Nicotine
3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 19 citations in OpenAlex.

  1. Trial
  2. Trial
  3. Review
  4. Sex, hormones, and lung health.Physiological reviews · 2026
    Review
  5. Article
  6. Article
  7. Urinary anatalline and nicotelline cut-points to distinguish between exclusive and dual use of tobacco products.Biomarkers : biochemical indicators of exposure, response, and susceptibility to chemicals · 2024
    Article
  8. Association of Urinary Biomarkers of Tobacco Exposure with Lung Cancer Risk in African American and White Cigarette Smokers in the Southern Community Cohort Study.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2024
    Article
  9. Review
  10. Article
  11. Influence of CYP2A6 Genetic Variation, Nicotine Dependence Severity, and Treatment on Smoking Cessation Success.Nicotine & tobacco research : official journal of the Society for Research on Nicotine and Tobacco · 2023
    Article
  12. Article
  13. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 6 institutions in 3 countries.

Meghan J ChenowethCampbell Family Mental Health Research Institute, Centre for Addiction and Mental Health, Toronto, ON, Canada.
Lisa Sanderson CoxDepartment of Population Health, University of Kansas School of Medicine, Kansas City, KS, USA.
Nikki L NollenDepartment of Population Health, University of Kansas School of Medicine, Kansas City, KS, USA.
Jasjit S AhluwaliaDepartments of Behavioral and Social Sciences and Medicine, Brown University, Providence, Rhode Island, USA.
Neal L BenowitzDepartment of Medicine, University of California, San Francisco, San Francisco, CA, USA.
Caryn LermanUSC Norris Comprehensive Cancer Center, Keck School of Medicine, University of Southern California, Los Angeles, CA, USA.
Jo KnightData Science Institute and Lancaster University Medical School, Lancaster, UK.
Rachel F TyndaleCampbell Family Mental Health Research Institute, Centre for Addiction and Mental Health, Toronto, ON, Canada. r.tyndale@utoronto.ca.
University of Kansas · USUniversity of Toronto · CABrown University · USLancaster University · GBUniversity of California, San Francisco · USUniversity of Southern California · US

Funding

University of Toronto Coordinating Genetics Core & Clinical Trial SiteU01DA020830 · NIDA · UNIVERSITY OF PENNSYLVANIA · PI CONTI, DAVID V · 2005 to 2014
$22.4M
Neuroscience-based Interventions for Cancer Risk Behavior ChangeR35CA197461 · NCI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI LERMAN, CARYN · 2015 to 2021
$6.0M
Helping African American Light Smokers QuitR01CA091912 · NCI · UNIVERSITY OF KANSAS MEDICAL CENTER · PI COX, LISA SANDERSON · 2001 to 2010
$5.6M
Understanding Disparities in Quitting in African American and White SmokersR01DA031815 · NIDA · UNIVERSITY OF KANSAS MEDICAL CENTER · PI NOLLEN, NICOLE L · 2012 to 2016
$3.2M
NCI NIH HHS R01 CA091912NCI NIH HHS R35 CA197461NIDA NIH HHS R01 DA031815NIDA NIH HHS U01 DA020830
6 · The paper itself

Abstract

Nicotine is inactivated by the polymorphic CYP2A6 enzyme to cotinine and then to 3'hydroxycotinine. The Nicotine Metabolite Ratio (NMR; 3'hydroxycotinine/cotinine) is a heritable nicotine metabolism biomarker, varies with sex and ancestry, and influences smoking cessation and disease risk. We conducted sex-stratified genome-wide association studies of the NMR in European American (EA) and African American (AA) smokers (NCT01314001, NCT00666978). In EA females (n = 389) and males (n = 541), one significant (P < 5e-8) chromosome 19 locus was found (top variant: rs56113850, CYP2A6 (intronic), for C vs. T: females: beta = 0.67, P = 7.5e-22, 21.8% variation explained; males: beta = 0.75, P = 1.2e-37, 26.1% variation explained). In AA females (n = 503) and males (n = 352), the top variant was found on chromosome 19 but differed by sex (females: rs11878604, CYP2A6 (~ 16 kb 3'), for C vs. T: beta = - 0.71, P = 6.6e-26, 16.2% variation explained; males: rs3865454, CYP2A6 (~ 7 kb 3'), for G vs. T: beta = 0.64, P = 1.9e-19, 18.9% variation explained). In AA females, a significant region was found on chromosome 12 (top variant: rs12425845: P = 5.0e-9, TMEM132C (~ 1 Mb 5'), 6.1% variation explained) which was not significant in AA males. In AA males, significant regions were found on chromosomes 6 (top variant: rs9379805: P = 4.8e-9, SLC17A2 (~ 8 kb 5'), 8.0% variation explained) and 16 (top variant: rs77368288: P = 3.5e-8, ZNF469 (~ 92 kb 5'), 7.1% variation explained) which were not significant in AA females. Further investigation of these associations outside of chromosome 19 is required, as they did not replicate. Understanding how sex and ancestry influence nicotine metabolism genetics may improve personalized approaches for smoking cessation and risk prediction for tobacco-related diseases.

Indexed as

Genetic MarkersGenome-Wide Association StudyAllelesBlack or African AmericanChromosome MappingFemaleGenotypeHumansMaleNicotinePhenotypePolymorphism, Single NucleotideQuantitative Trait, HeritableQuantitative Trait LociSex FactorsSmokingGenetic MarkersNicotine

Identifiers

PMID34599228
PMCPMC8486765
OpenAlexW3203127817

What OpenQuestion holds

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LicenceCC BY
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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.