Evidence map›Paper›PMID 34598707›Full record

ArticleBMC infectious diseases2021

Genotypic and phenotypic characteristics of Streptococcus pneumoniae from community-acquired pneumonia patients and healthy asymptomatic participants in Sichuan province, China.

Shihui Peng, Hongyu Ren, Jianping Deng, Na Zhao, Yinan Li, Ming Li, Qiwu Yuan, Zhengdong Zhang, Longze Luo, Linzi Zeng and 9 more

Open access · goldAbstract read
In one paragraph

Article in BMC infectious diseases, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed, 1 pooled it
0.9field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 1 synthesis or guideline pooled it, 8 citations in OpenAlex.

  1. Prevalence ofHuman vaccines & immunotherapeutics · 2024
    Pooled it
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 6 institutions in 1 country.

Shihui Peng *The Collaboration Unit for Field Epidemiology of State Key Laboratory for Infectious Disease Prevention and Control, Jiangxi Provincial Key Laboratory of Animal-Origin and Vector-Borne Diseases, Nanchang Center for Disease Control and Prevention, Nanchang, People's Republic of China.
Hongyu Ren *State Key Laboratory for Infectious Disease Prevention and Control, National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, No. 155, Chang Bai Road, ChangPing District, Beijing, 102206, People's Republic of China.
Jianping Deng *Zigong Center for Disease Control and Prevention, Zigong, People's Republic of China.
Na ZhaoState Key Laboratory for Infectious Disease Prevention and Control, National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, No. 155, Chang Bai Road, ChangPing District, Beijing, 102206, People's Republic of China.
Yinan LiState Key Laboratory for Infectious Disease Prevention and Control, National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, No. 155, Chang Bai Road, ChangPing District, Beijing, 102206, People's Republic of China.
Ming LiChengdu Center for Disease Control and Prevention, Chengdu, People's Republic of China.
Qiwu YuanChengdu Center for Disease Control and Prevention, Chengdu, People's Republic of China.
Zhengdong ZhangZigong Center for Disease Control and Prevention, Zigong, People's Republic of China.
Longze LuoSichuan Center for Disease Control and Prevention, Chengdu, People's Republic of China.
Linzi ZengSichuan Center for Disease Control and Prevention, Chengdu, People's Republic of China.
Bin WangZigong Center for Disease Control and Prevention, Zigong, People's Republic of China.
Nianli ZouZigong Center for Disease Control and Prevention, Zigong, People's Republic of China.
Changguo GuThe Fifth People's Hospital of Chengdu, Chengdu, People's Republic of China.
Xin HuangThe Fifth People's Hospital of Chengdu, Chengdu, People's Republic of China.
Zheng LiaoThe Collaboration Unit for Field Epidemiology of State Key Laboratory for Infectious Disease Prevention and Control, Jiangxi Provincial Key Laboratory of Animal-Origin and Vector-Borne Diseases, Nanchang Center for Disease Control and Prevention, Nanchang, People's Republic of China.
Shenen Chen *The Collaboration Unit for Field Epidemiology of State Key Laboratory for Infectious Disease Prevention and Control, Jiangxi Provincial Key Laboratory of Animal-Origin and Vector-Borne Diseases, Nanchang Center for Disease Control and Prevention, Nanchang, People's Republic of China.
Haiying ChenThe Collaboration Unit for Field Epidemiology of State Key Laboratory for Infectious Disease Prevention and Control, Jiangxi Provincial Key Laboratory of Animal-Origin and Vector-Borne Diseases, Nanchang Center for Disease Control and Prevention, Nanchang, People's Republic of China.
Qun LiZigong Center for Disease Control and Prevention, Zigong, People's Republic of China.
Tian QinState Key Laboratory for Infectious Disease Prevention and Control, National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, No. 155, Chang Bai Road, ChangPing District, Beijing, 102206, People's Republic of China. qintian@icdc.cn.
Zigong First People's Hospital · CNNanchang Center for Disease Control and Prevention · CNNational Institute for Communicable Disease Control and Prevention · CNChengdu Center for Disease Control and Prevention · CNChengdu Fifth People's Hospital · CNSichuan Center for Disease Control and Prevention · CN

Funding

Major Science and Technological Project of Jiangxi Province 20201BBG71010National Major Science and Technology Project of China 2018ZX10712001-007National Natural Science Foundation of China 81671985Sanming Project of Medicine in Shenzhen SZSM201811071Science and Technology Department of Jiangxi Province, China 20202BBGL73049Science Foundation for the State Key Laboratory for Infectious Disease Prevention and Control of China 2019SKLID403
6 · The paper itself

Abstract

backgroundStreptococcus pneumoniae (S. pneumoniae) is the common cause of community-acquired pneumonia (CAP) and is also found in the upper respiratory tract of healthy people. Hence, the study aimed to compare the serotypes, virulence/pili genes, and antibiotic susceptibility of S. pneumoniae from healthy asymptomatic participants and CAP patients.

methodsStreptococcus pneumoniae were retrospectively collected from health asymptomatic participants and CAP patients in Sichuan, China. The serotypes were tested by multiplex polymerase chain reaction (PCR) or Quellung reaction. Antibiotic susceptibility testing was performed using the broth microdilution method. The molecular epidemiology of S. pneumoniae was analyzed by multilocus sequence typing (MLST). Additionally, the presence of virulence/pili genes were detected using PCR.

resultsA total of 83 pneumococcal isolates were collected in the current study. Of these, 52 and 31 isolates were from healthy asymptomatic participants and CAP patients, respectively. Most of S. pneumoniae were resistant to erythromycin (ERY), clindamycin (CLI), tetracycline (TET) and trimethoprim-sulfamethoxazole (SXT). 90.4% isolates were classified as multidrug resistant (MDR). The predominant serotypes were 3, 19F and 19A in the CAP carriers, whereas 3, 6 and 19F were the main serotypes among the asymptomatic carriers. The overall coverage rates of pneumococcal conjugate vaccine (PCV) 10 and PCV13 serotypes were 34.9% and 66.3%, respectively. The predominant sequence types (STs) were ST271, ST320, and ST3397. There were significant differences in some resistance and virulence characteristics between CAP patients and asymptomatic carriers. Additionally, clonal complex (CC) 271 strains had higher percentage in resistance to cefuroxime (CXM) and cefotaxime (CEF), meropenem (MER) and cefepime (CFP), which mainly carried the rlrA and sipA genes.

conclusionsHigh coverage rate of PCV13 and high prevalence of MDR indicated the necessity to expand immunization with PCV13 and rationally use the antibiotics in Sichuan, China. Importantly, long-term surveillance should be conducted to assess effectiveness brought by vaccines. Our findings may supply new guidance for developing new pneumococcal vaccines.

Indexed as

Pneumococcal InfectionsPneumoniaHumansMicrobial Sensitivity TestsMultilocus Sequence TypingRetrospective StudiesStreptococcus pneumoniaeAntimicrobial susceptibilityMolecular epidemiologySerotypeStreptococcus pneumoniaeVirulence gene

Identifiers

PMID34598707
PMCPMC8485506
OpenAlexW3201712496

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.