Evidence map›Paper›PMID 34597139›Full record

ArticleScience advances2021

Pseudogene-mediated DNA demethylation leads to oncogene activation.

Junsu Kwon, Yanjing V Liu, Chong Gao, Mahmoud A Bassal, Adrianna I Jones, Junyu Yang, Zhiyuan Chen, Ying Li, Henry Yang, Leilei Chen and 4 more

Open access · goldAbstract read
In one paragraph

Article in Science advances, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.1field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 22 citations in OpenAlex.

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  13. [Progress on liver diseases in 2021].Zhonghua gan zang bing za zhi = Zhonghua ganzangbing zazhi = Chinese journal of hepatology · 2022
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 4 institutions in 3 countries.

Junsu KwonCancer Science Institute of Singapore, National University of Singapore, Singapore 117599, Singapore.ORCID 0000-0002-6187-1366
Yanjing V LiuCancer Science Institute of Singapore, National University of Singapore, Singapore 117599, Singapore.ORCID 0000-0002-7977-0491
Chong GaoDepartment of Pathology, Brigham and Women's Hospital, Boston, MA 02115, USA.ORCID 0000-0002-8934-1586
Mahmoud A BassalCancer Science Institute of Singapore, National University of Singapore, Singapore 117599, Singapore.ORCID 0000-0003-4322-2968
Adrianna I JonesHarvard Stem Cell Institute, Harvard Medical School, Boston, MA 02115 USA.ORCID 0000-0002-6621-3530
Junyu YangDepartment of Pathology, Brigham and Women's Hospital, Boston, MA 02115, USA.
Zhiyuan ChenDepartment of Pathology, Brigham and Women's Hospital, Boston, MA 02115, USA.
Ying LiCancer Science Institute of Singapore, National University of Singapore, Singapore 117599, Singapore.
Henry YangCancer Science Institute of Singapore, National University of Singapore, Singapore 117599, Singapore.ORCID 0000-0002-1155-8216
Leilei ChenCancer Science Institute of Singapore, National University of Singapore, Singapore 117599, Singapore.ORCID 0000-0002-1987-3878
Annalisa Di RuscioHarvard Medical School Initiative for RNA Medicine, Harvard Medical School, Boston, MA 02115, USA.ORCID 0000-0002-9705-4245
Yvonne TayCancer Science Institute of Singapore, National University of Singapore, Singapore 117599, Singapore.ORCID 0000-0003-4989-9101
Li ChaiDepartment of Pathology, Brigham and Women's Hospital, Boston, MA 02115, USA.ORCID 0000-0003-1937-4750
Daniel G TenenCancer Science Institute of Singapore, National University of Singapore, Singapore 117599, Singapore.ORCID 0000-0002-6423-3888
National University of Singapore · SGBrigham and Women's Hospital · USHarvard University · USUniversità degli Studi del Piemonte Orientale “Amedeo Avogadro” · IT

Funding

Transcriptional and epigenetic heterogeneity of stem/progenitor cellsP01HL131477 · NHLBI · MASSACHUSETTS GENERAL HOSPITAL · PI David T Scadden · 2017 to 2026
$24.6M
Transcription regulation in hematopoiesisP01HL095489 · NHLBI · BOSTON CHILDREN'S HOSPITAL · PI PARK, SHINYOUNG · 2010 to 2020
$20.1M
Mechanisms of regulation by RNA in acute myeloid leukemiaR35CA197697 · NCI · BETH ISRAEL DEACONESS MEDICAL CENTER · PI TENEN, DANIEL G · 2015 to 2021
$7.1M
Determining the role of DNMT-interacting RNAs in myeloid disordersR00CA188595 · NCI · BETH ISRAEL DEACONESS MEDICAL CENTER · PI DI RUSCIO, ANNALISA · 2017 to 2019
$747k
NCI NIH HHS R00 CA188595NCI NIH HHS R35 CA197697NHLBI NIH HHS P01 HL095489NHLBI NIH HHS P01 HL131477
6 · The paper itself

Abstract

Pseudogenes, noncoding homologs of protein-coding genes, once considered nonfunctional evolutionary relics, have recently been linked to patient prognoses and cancer subtypes. Despite this potential clinical importance, only a handful of >12,000 pseudogenes in humans have been characterized in cancers to date. Here, we describe a previously unrecognized role for pseudogenes as potent epigenetic regulators that can demethylate and activate oncogenes. We focused on

Identifiers

PMID34597139
PMCPMC10938534
OpenAlexW3204189800

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.