ArticleIEEE transactions on visualization and computer graphics2022
Gosling: A Grammar-based Toolkit for Scalable and Interactive Genomics Data Visualization.
Article in IEEE transactions on visualization and computer graphics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
38 citing papers in PubMed.
- Geranium: Multimodal Retrieval of Genomics Data Visualizations.IEEE transactions on visualization and computer graphics · 2026Article
- Uchimata: a toolkit for visualization of 3D genome structures on the web and in computational notebooks.Bioinformatics (Oxford, England) · 2026Article
- FAVOR 2.0: A reengineered functional annotation of variants online resource for interpreting genomic variation.Nucleic acids research · 2026Article
- TSSpredator-Web: A web-application for transcription start site prediction and exploration.PloS one · 2026Article
- Design Space and Declarative Grammar for 3D Genomic Data Visualization.IEEE transactions on visualization and computer graphics · 2026Article
- Developing pangenomes for large and complex plant genomes and their representation formats.Journal of advanced research · 2025Review
- Gosling Designer: a Platform to Democratize Construction and Sharing of Genomics Data Visualization Tools.ArXiv · 2025Article
- Safire: Similarity Framework for Visualization Retrieval.IEEE Visualization Conference : VIS. IEEE Conference on Visualization · 2025Article
- Ten simple rules for making biomedical data resources accessible.PLoS computational biology · 2025Article
- Uchimata: a toolkit for visualization of 3D genome structures on the web and in computational notebooks.ArXiv · 2025Article
- Informatics at the Frontier of Cancer Research.Cancer research · 2025Review
- MoPSeq-DB: a user-friendly web application for genomic data management and analysis of marine mollusc pathogens.Database : the journal of biological databases and curation · 2025Article
- REDIportal: toward an integrated view of the A-to-I editing.Nucleic acids research · 2025Article
- Understanding Visualization Authoring Techniques for Genomics Data in the Context of Personas and Tasks.IEEE transactions on visualization and computer graphics · 2025Article
- Aardvark: Composite Visualizations of Trees, Time-Series, and Images.IEEE transactions on visualization and computer graphics · 2025Article
- AlphaMissenseR: an integrated framework for investigating missense mutations in human protein-coding genes.Bioinformatics advances · 2025Article
- Learnable and Expressive Visualization Authoring Through Blended Interfaces.IEEE transactions on visualization and computer graphics · 2025Article
- KnowNet: Guided Health Information Seeking from LLMs via Knowledge Graph IntegrationIEEE transactions on visualization and computer graphics · 2025Article
- Visualizing metagenomic and metatranscriptomic data: A comprehensive review.Computational and structural biotechnology journal · 2024Review
- AltGosling: automatic generation of text descriptions for accessible genomics data visualization.Bioinformatics (Oxford, England) · 2024Article
Corrections and comments
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Authors and funding
4 authors.
Funding
Abstract
The combination of diverse data types and analysis tasks in genomics has resulted in the development of a wide range of visualization techniques and tools. However, most existing tools are tailored to a specific problem or data type and offer limited customization, making it challenging to optimize visualizations for new analysis tasks or datasets. To address this challenge, we designed Gosling-a grammar for interactive and scalable genomics data visualization. Gosling balances expressiveness for comprehensive multi-scale genomics data visualizations with accessibility for domain scientists. Our accompanying JavaScript toolkit called Gosling.js provides scalable and interactive rendering. Gosling.js is built on top of an existing platform for web-based genomics data visualization to further simplify the visualization of common genomics data formats. We demonstrate the expressiveness of the grammar through a variety of real-world examples. Furthermore, we show how Gosling supports the design of novel genomics visualizations. An online editor and examples of Gosling.js, its source code, and documentation are available at https://gosling.js.org.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.