Evidence map›Paper›PMID 34595921›Full record

ArticleBiochemistry2021

Mutation of βGln114 to Ala Alters the Stabilities of Allosteric States in Tryptophan Synthase Catalysis.

Rittik K Ghosh, Eduardo Hilario, Viktoriia Liu, Yangyang Wang, Dimitri Niks, Jacob B Holmes, Varun V Sakhrani, Leonard J Mueller, Michael F Dunn

Open access · greenAbstract read
In one paragraph

Article in Biochemistry, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.7field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Allosteric regulation of substrate channeling:Frontiers in molecular biosciences · 2022
    Review
  5. Structural Basis for Allostery in PLP-dependent Enzymes.Frontiers in molecular biosciences · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Rittik K GhoshDepartment of Biochemistry, University of California, Riverside, California 92521, United States.
Eduardo HilarioDepartment of Chemistry, University of California, Riverside, California 92521, United States.
Viktoriia LiuDepartment of Chemistry, University of California, Riverside, California 92521, United States.
Yangyang WangDepartment of Chemistry, University of California, Riverside, California 92521, United States.
Dimitri NiksDepartment of Biochemistry, University of California, Riverside, California 92521, United States.
Jacob B HolmesDepartment of Chemistry, University of California, Riverside, California 92521, United States.
Varun V SakhraniDepartment of Chemistry, University of California, Riverside, California 92521, United States.
Leonard J MuellerDepartment of Chemistry, University of California, Riverside, California 92521, United States.ORCID 0000-0002-2607-9875
Michael F DunnDepartment of Biochemistry, University of California, Riverside, California 92521, United States.
University of California, Riverside · US

Funding

Chemically-Rich Structure and Dynamics in the Active Site of Tryptophan SynthaseR01GM097569 · NIGMS · UNIVERSITY OF CALIFORNIA RIVERSIDE · PI MUELLER, LEONARD J · 2011 to 2020
$2.9M
Structural and proton dynamics of pyridoxal-5’-phosphate dependent enzymes Resubmission (Equipment Supplement)R01GM137008 · NIGMS · UNIVERSITY OF GEORGIA · PI KOVALEVSKYI, ANDRII Y, MUELLER, LEONARD J · 2020 to 2023
$2.8M
Acquisition of a Scalable Storage Cluster for Data Intensive NIH ResearchS10OD016290 · OD · UNIVERSITY OF CALIFORNIA RIVERSIDE · PI GIRKE, THOMAS · 2014 to 2014
$593k
NIGMS NIH HHS R01 GM097569NIGMS NIH HHS R01 GM137008NIH HHS S10 OD016290
6 · The paper itself

Abstract

The tryptophan synthase (TS) bienzyme complexes found in bacteria, yeasts, and molds are pyridoxal 5'-phosphate (PLP)-requiring enzymes that synthesize l-Trp. In the TS catalytic cycle, switching between the open and closed states of the α- and β-subunits via allosteric interactions is key to the efficient conversion of 3-indole-d-glycerol-3'-phosphate and l-Ser to l-Trp. In this process, the roles played by β-site residues proximal to the PLP cofactor have not yet been fully established. βGln114 is one such residue. To explore the roles played by βQ114, we conducted a detailed investigation of the βQ114A mutation on the structure and function of tryptophan synthase. Initial steady-state kinetic and static ultraviolet-visible spectroscopic analyses showed the Q to A mutation impairs catalytic activity and alters the stabilities of intermediates in the β-reaction. Therefore, we conducted X-ray structural and solid-state nuclear magnetic resonance spectroscopic studies to compare the wild-type and βQ114A mutant enzymes. These comparisons establish that the protein structural changes are limited to the Gln to Ala replacement, the loss of hydrogen bonds among the side chains of βGln114, βAsn145, and βArg148, and the inclusion of waters in the cavity created by substitution of the smaller Ala side chain. Because the conformations of the open and closed allosteric states are not changed by the mutation, we hypothesize that the altered properties arise from the lost hydrogen bonds that alter the relative stabilities of the open (β

Indexed as

Allosteric RegulationBacterial ProteinsBiocatalysisKineticsMutagenesis, Site-DirectedMutationSalmonella typhimuriumTryptophan SynthaseBacterial ProteinsTryptophan Synthase

Identifiers

PMID34595921
PMCPMC9122093
OpenAlexW3203873401

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.