Evidence map›Paper›PMID 34595747›Full record

ArticleNeuropathology and applied neurobiology2022

Image-based deep learning reveals the responses of human motor neurons to stress and VCP-related ALS.

Colombine Verzat, Jasmine Harley, Rickie Patani, Raphaëlle Luisier

Abstract read
In one paragraph

Article in Neuropathology and applied neurobiology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Colombine VerzatGenomics and Health Informatics Group, Idiap Research Institute, Martigny, Switzerland.ORCID 0000-0001-5796-0924
Jasmine HarleyHuman Stem Cells and Neurodegeneration Laboratory, The Francis Crick Institute, London, UK.
Rickie PataniHuman Stem Cells and Neurodegeneration Laboratory, The Francis Crick Institute, London, UK.ORCID 0000-0002-3825-7675
Raphaëlle LuisierGenomics and Health Informatics Group, Idiap Research Institute, Martigny, Switzerland.ORCID 0000-0002-5657-2943

Funding

Cancer Research UK FC010110Medical Research Council MR/M02492X/1Medical Research Council MR/S006591/1Wellcome Trust
6 · The paper itself

Abstract

aimsAlthough morphological attributes of cells and their substructures are recognised readouts of physiological or pathophysiological states, these have been relatively understudied in amyotrophic lateral sclerosis (ALS) research.

methodsIn this study, we integrate multichannel fluorescence high-content microscopy data with deep learning imaging methods to reveal-directly from unsegmented images-novel neurite-associated morphological perturbations associated with (ALS-causing) VCP-mutant human motor neurons (MNs).

resultsSurprisingly, we reveal that previously unrecognised disease-relevant information is withheld in broadly used and often considered 'generic' biological markers of nuclei (DAPI) and neurons (

conclusionsOur study therefore reveals disease-relevant information contained in a range of both generic and more specific fluorescent markers and establishes the use of image-based deep learning methods for rapid, automated and unbiased identification of biological hypotheses.

Indexed as

Deep LearningAmyotrophic Lateral SclerosisHumansInduced Pluripotent Stem CellsMotor NeuronsNeuritesPhenotypeamyotrophic lateral sclerosisdeep learninghuman induced pluripotent stem cellsimmunofluorescencemotor neurons

Identifiers

PMID34595747
PMCPMC9298273

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.