Evidence map›Paper›PMID 34595290›Full record

ArticleBio-protocol2017

Brief Protocol for EDGE Bioinformatics: Analyzing Microbial and Metagenomic NGS Data.

Casandra Philipson, Karen Davenport, Logan Voegtly, Chien-Chi Lo, Po-E Li, Yan Xu, Migun Shakya, Regina Z Cer, Kimberly A Bishop-Lilly, Theron Hamilton and 1 more

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Bio-protocol, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
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  5. Observational
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Casandra PhilipsonGenomics and Bioinformatics Department, Biological Defense Research Directorate, Naval Medical Research Center-Frederick, 8400 Research Plaza, Fort Detrick, MD, USA.
Karen DavenportBioscience Division, Los Alamos National Laboratory, Los Alamos, NM, USA.
Logan VoegtlyGenomics and Bioinformatics Department, Biological Defense Research Directorate, Naval Medical Research Center-Frederick, 8400 Research Plaza, Fort Detrick, MD, USA.
Chien-Chi LoBioscience Division, Los Alamos National Laboratory, Los Alamos, NM, USA.
Po-E LiBioscience Division, Los Alamos National Laboratory, Los Alamos, NM, USA.
Yan XuBioscience Division, Los Alamos National Laboratory, Los Alamos, NM, USA.
Migun ShakyaBioscience Division, Los Alamos National Laboratory, Los Alamos, NM, USA.
Regina Z CerGenomics and Bioinformatics Department, Biological Defense Research Directorate, Naval Medical Research Center-Frederick, 8400 Research Plaza, Fort Detrick, MD, USA.
Kimberly A Bishop-LillyGenomics and Bioinformatics Department, Biological Defense Research Directorate, Naval Medical Research Center-Frederick, 8400 Research Plaza, Fort Detrick, MD, USA.
Theron HamiltonGenomics and Bioinformatics Department, Biological Defense Research Directorate, Naval Medical Research Center-Frederick, 8400 Research Plaza, Fort Detrick, MD, USA.
Patrick S G ChainBioscience Division, Los Alamos National Laboratory, Los Alamos, NM, USA.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Next-generation sequencing (NGS) offers unparalleled resolution for untargeted organism detection and characterization. However, the majority of NGS analysis programs require users to be proficient in programming and command-line interfaces. EDGE bioinformatics was developed to offer scientists with little to no bioinformatics expertise a point-and-click platform for analyzing sequencing data in a rapid and reproducible manner. EDGE (

Indexed as

BioinformaticsGenomicsMetagenomicsNext-generation sequencing

Identifiers

PMID34595290
PMCPMC8438472

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.