Evidence map›Paper›PMID 34594521›Full record

ArticleEcology and evolution2021

Species distribution models for invasive Eurasian watermilfoil highlight the importance of data quality and limitations of discrimination accuracy metrics.

Shyam M Thomas, Michael R Verhoeven, Jake R Walsh, Daniel J Larkin, Gretchen J A Hansen

Open access · goldAbstract read
In one paragraph

Article in Ecology and evolution, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
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  4. The Prediction of Distribution of the InvasivePlants (Basel, Switzerland) · 2022
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Shyam M ThomasDepartment of Fisheries Wildlife & Conservation Biology and Minnesota Aquatic Invasive Species Research Center University of Minnesota St. Paul Minnesota USA.ORCID https://orcid.org/0000-0003-0816-8601
Michael R VerhoevenDepartment of Fisheries Wildlife & Conservation Biology and Minnesota Aquatic Invasive Species Research Center University of Minnesota St. Paul Minnesota USA.
Jake R WalshDepartment of Fisheries Wildlife & Conservation Biology and Minnesota Aquatic Invasive Species Research Center University of Minnesota St. Paul Minnesota USA.
Daniel J LarkinDepartment of Fisheries Wildlife & Conservation Biology and Minnesota Aquatic Invasive Species Research Center University of Minnesota St. Paul Minnesota USA.
Gretchen J A HansenDepartment of Fisheries Wildlife & Conservation Biology and Minnesota Aquatic Invasive Species Research Center University of Minnesota St. Paul Minnesota USA.
University of Minnesota · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

aimAvailability of uniformly collected presence, absence, and abundance data remains a key challenge in species distribution modeling (SDM). For invasive species, abundance and impacts are highly variable across landscapes, and quality occurrence and abundance data are critical for predicting locations at high risk for invasion and impacts, respectively. We leverage a large aquatic vegetation dataset comprising point-level survey data that includes information on the invasive plant LOCATION: Minnesota, USA.

methodsEurasian watermilfoil presence-absence and abundance information were gathered from 468 surveyed lakes, and 801 unsurveyed lakes were leveraged as pseudoabsences for presence-only models. A Random Forest algorithm was used to model the distribution and abundance of Eurasian watermilfoil as a function of lake-specific predictors, both with and without a spatial autocovariate. Occurrence-based SDMs were evaluated using conventional discrimination accuracy metrics and functional accuracy metrics assessing correlation between predicted suitability and observed abundance.

resultsWater temperature degree days and maximum lake depth were two leading predictors influencing both invasion risk and abundance, but they were relatively less important for predicting abundance than other water quality measures. Road density was a strong predictor of Eurasian watermilfoil invasion risk but not abundance. Model evaluations highlighted significant differences: Presence-absence models had high functional accuracy despite low discrimination accuracy, whereas presence-only models showed the opposite pattern. MAIN

conclusionComplementing presence-absence data with abundance information offers a richer understanding of invasive Eurasian watermilfoil's ecological niche and enables evaluation of the model's functional accuracy. Conventional discrimination accuracy measures were misleading when models were developed using pseudoabsences. We thus caution against the overuse of presence-only models and suggest directing more effort toward systematic monitoring programs that yield high-quality data.

Indexed as

abundance–suitability relationshipdiscrimination accuracyfunctional accuracyinvasion riskpseudoabsencesrandom forestspatial autocovariatewater temperature

Identifiers

PMID34594521
PMCPMC8462136
OpenAlexW3196200585

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.