Evidence map›Paper›PMID 34594479›Full record

ArticleProceedings. IEEE International Symposium on Biomedical Imaging2020

DEEP NETWORK-BASED FEATURE SELECTION FOR IMAGING GENETICS: APPLICATION TO IDENTIFYING BIOMARKERS FOR PARKINSON'S DISEASE.

Mansu Kim, Ji Hye Won, Jisu Hong, Junmo Kwon, Hyunjin Park, Li Shen

Abstract read
In one paragraph

Article in Proceedings. IEEE International Symposium on Biomedical Imaging, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Integrating Neuroimaging and Genetics via Contrastive Learning for Working Memory.... IEEE-EMBS International Conference on Biomedical and Health Informatics. IEEE-EMBS International Conference on Biomedical and Health Informatics · 2024
    Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Mansu KimDepartment of Electrical and Computer Engineering, Sungkyunkwan University, Korea.
Ji Hye WonDepartment of Electrical and Computer Engineering, Sungkyunkwan University, Korea.
Jisu HongDepartment of Electrical and Computer Engineering, Sungkyunkwan University, Korea.
Junmo KwonDepartment of Electrical and Computer Engineering, Sungkyunkwan University, Korea.
Hyunjin ParkCenter for Neuroscience Imaging Research, Institute for Basic Science, Korea.
Li ShenDepartment of Biostatistics, Epidemiology and Informatics, University of Pennsylvania, USA.

Funding

Advancing Analysis of Multi-omics Data in Alzheimer's Disease ResearchRF1AG063481 · NIA · UNIVERSITY OF PENNSYLVANIA · PI LONG, QI · 2019 to 2020
$3.8M
Integrative Bioinformatics Approaches to Human Brain Genomics and ConnectomicsR01EB022574 · NIBIB · UNIVERSITY OF PENNSYLVANIA · PI SHEN, LI · 2016 to 2019
$1.9M
NIA NIH HHS RF1 AG063481NIBIB NIH HHS R01 EB022574
6 · The paper itself

Abstract

Imaging genetics is a methodology for discovering associations between imaging and genetic variables. Many studies adopted sparse models such as sparse canonical correlation analysis (SCCA) for imaging genetics. These methods are limited to modeling the linear imaging genetics relationship and cannot capture the non-linear high-level relationship between the explored variables. Deep learning approaches are underexplored in imaging genetics, compared to their great successes in many other biomedical domains such as image segmentation and disease classification. In this work, we proposed a deep learning model to select genetic features that can explain the imaging features well. Our empirical study on simulated and real datasets demonstrated that our method outperformed the widely used SCCA method and was able to select important genetic features in a robust fashion. These promising results indicate our deep learning model has the potential to reveal new biomarkers to improve mechanistic understanding of the studied brain disorders.

Indexed as

deep learningfeature selectionImaging geneticsParkinson’s disease

Identifiers

PMID34594479
PMCPMC8480412

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.