Evidence map›Paper›PMID 34593939›Full record

ArticleScientific reports2021

Spatiotemporal development of coexisting wave domains of Rho activity in the cell cortex.

Siarhei Hladyshau, Mary Kho, Shuyi Nie, Denis Tsygankov

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Siarhei HladyshauSchool of Biology, Georgia Institute of Technology, Atlanta, GA, USA.
Mary KhoSchool of Biology, Georgia Institute of Technology, Atlanta, GA, USA.
Shuyi NieSchool of Biology, Georgia Institute of Technology, Atlanta, GA, USA.
Denis TsygankovWallace H. Coulter Department of Biomedical Engineering, Georgia Institute of Technology and Emory University, Atlanta, GA, USA. denis.tsygankov@bme.gatech.edu.
Georgia Institute of Technology · US

Funding

Coordinated Actin Regulation in Directed Neural Crest Cell MigrationR01GM136892 · NIGMS · GEORGIA INSTITUTE OF TECHNOLOGY · PI NIE, SHUYI · 2020 to 2024
$1.6M
NIGMS NIH HHS R01 GM136892
6 · The paper itself

Abstract

The Rho family GTPases are molecular switches that regulate cytoskeletal dynamics and cell movement through a complex spatiotemporal organization of their activity. In Patiria miniata (starfish) oocytes under in vitro experimental conditions (with overexpressed Ect2, induced expression of Δ90 cyclin B, and roscovitine treatment), such activity generates multiple co-existing regions of coherent propagation of actin waves. Here we use computational modeling to investigate the development and properties of such wave domains. The model reveals that the formation of wave domains requires a balance between the activation and inhibition in the Rho signaling motif. Intriguingly, the development of the wave domains is preceded by a stage of low-activity quasi-static patterns, which may not be readily observed in experiments. Spatiotemporal patterns of this stage and the different paths of their destabilization define the behavior of the system in the later high-activity (observable) stage. Accounting for a strong intrinsic noise allowed us to achieve good quantitative agreement between simulated dynamics in different parameter regimes of the model and different wave dynamics in Patiria miniata and wild type Xenopus laevis (frog) data. For quantitative comparison of simulated and experimental results, we developed an automated method of wave domain detection, which revealed a sharp reversal in the process of pattern formation in starfish oocytes. Overall, our findings provide an insight into spatiotemporal regulation of complex and diverse but still computationally reproducible cell-level actin dynamics.

Indexed as

Models, MolecularProtein Interaction Domains and MotifsAlgorithmsAnimalsEnzyme ActivationOocytesrho GTP-Binding ProteinsStarfishStructure-Activity RelationshipTime-Lapse Imagingrho GTP-Binding Proteins

Identifiers

PMID34593939
PMCPMC8484676
OpenAlexW3165610450

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.