Evidence map›Paper›PMID 34591915›Full record

ArticlePloS one2021

Plant growth promoting endophyte Burkholderia contaminans NZ antagonizes phytopathogen Macrophomina phaseolina through melanin synthesis and pyrrolnitrin inhibition.

Nazia R Zaman, Umar F Chowdhury, Rifath N Reza, Farhana T Chowdhury, Mrinmoy Sarker, Muhammad M Hossain, Md Ahedul Akbor, Al Amin, Mohammad Riazul Islam, Haseena Khan

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
6.2field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 41 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Nazia R ZamanMolecular Biology Laboratory, Department of Biochemistry and Molecular Biology, Faculty Biological Sciences, University of Dhaka, Dhaka, Bangladesh.
Umar F ChowdhuryMolecular Biology Laboratory, Department of Biochemistry and Molecular Biology, Faculty Biological Sciences, University of Dhaka, Dhaka, Bangladesh.
Rifath N RezaMolecular Biology Laboratory, Department of Biochemistry and Molecular Biology, Faculty Biological Sciences, University of Dhaka, Dhaka, Bangladesh.
Farhana T ChowdhuryMolecular Biology Laboratory, Department of Biochemistry and Molecular Biology, Faculty Biological Sciences, University of Dhaka, Dhaka, Bangladesh.
Mrinmoy SarkerNSU Genome Research Institute (NGRI), Department of Biochemistry and Microbiology, North South University, Dhaka, Bangladesh.
Muhammad M HossainNSU Genome Research Institute (NGRI), Department of Biochemistry and Microbiology, North South University, Dhaka, Bangladesh.
Md Ahedul AkborInstitute of National Analytical Research and Service (INARS), Bangladesh Council of Scientific and Industrial Research (BCSIR), Dhaka, Bangladesh.
Al AminMolecular Biology Laboratory, Department of Biochemistry and Molecular Biology, Faculty Biological Sciences, University of Dhaka, Dhaka, Bangladesh.ORCID 0000-0002-6641-4404
Mohammad Riazul IslamMolecular Biology Laboratory, Department of Biochemistry and Molecular Biology, Faculty Biological Sciences, University of Dhaka, Dhaka, Bangladesh.ORCID 0000-0003-3858-5334
Haseena KhanMolecular Biology Laboratory, Department of Biochemistry and Molecular Biology, Faculty Biological Sciences, University of Dhaka, Dhaka, Bangladesh.
University of Dhaka · BDNorth South University · BDBangladesh Council of Scientific and Industrial Research · BD

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The endophytic bacterium Burkholderia contaminans NZ was isolated from jute, which is an important fiber-producing plant. This bacterium exhibits significant growth promotion activity in in vivo pot experiments, and like other plant growth-promoting (PGP) bacteria fixes nitrogen, produces indole acetic acid (IAA), siderophore, and 1-aminocyclopropane-1-carboxylate (ACC) deaminase activity. B. contaminans NZ is considered to exert a promising growth inhibitory effect on Macrophomina phaseolina, a phytopathogen responsible for infecting hundreds of crops worldwide. This study aimed to identify the possibility of B. contaminans NZ as a safe biocontrol agent and assess its effectiveness in suppressing phytopathogenic fungi, especially M. phaseolina. Co-culture of M. phaseolina with B. contaminans NZ on both solid and liquid media revealed appreciable growth suppression of M. phaseolina and its chromogenic aberration in liquid culture. Genome mining of B. contaminans NZ using NaPDoS and antiSMASH revealed gene clusters that displayed 100% similarity for cytotoxic and antifungal substances, such as pyrrolnitrin. GC-MS analysis of B. contaminans NZ culture extracts revealed various bioactive compounds, including catechol; 9,10-dihydro-12'-hydroxy-2'-methyl-5'-(phenylmethyl)- ergotaman 3',6',18-trione; 2,3-dihydro-3,5- dihydroxy-6-methyl-4H-pyran-4-one; 1-(1,6-Dioxooctadecyl)- pyrrolidine; 9-Octadecenamide; and 2- methoxy- phenol. These compounds reportedly exhibit tyrosinase inhibitory, antifungal, and antibiotic activities. Using a more targeted approach, an RP-HPLC purified fraction was analyzed by LC-MS, confirming the existence of pyrrolnitrin in the B. contaminans NZ extract. Secondary metabolites, such as catechol and ergotaman, have been predicted to inhibit melanin synthesis in M. phaseolina. Thus, B. contaminans NZ appears to inhibit phytopathogens by apparently impairing melanin synthesis and other potential biochemical pathways, exhibiting considerable fungistatic activity.

Indexed as

AscomycotaBiological Control AgentsBurkholderiaCoculture TechniquesCrops, AgriculturalEndophytesGas Chromatography-Mass SpectrometryIndoleacetic AcidsMelaninsNitrogen FixationPyrrolnitrinWhole Genome SequencingBiological Control Agentsindoleacetic acidIndoleacetic AcidsMelaninsPyrrolnitrin

Identifiers

PMID34591915
PMCPMC8483353
OpenAlexW3202916439

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.