Evidence map›Paper›PMID 34591841›Full record

ArticlePLoS computational biology2021

Heterodimer-heterotetramer formation mediates enhanced sensor activity in a biophysical model for BMP signaling.

Md Shahriar Karim, Aasakiran Madamanchi, James A Dutko, Mary C Mullins, David M Umulis

Abstract read
In one paragraph

Article in PLoS computational biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Md Shahriar KarimAgricultural and Biological Engineering, Purdue University, West Lafayette, Indiana, United States of America.ORCID 0000-0001-8039-2742
Aasakiran MadamanchiWeldon School of Biomedical Engineering, Purdue University, West Lafayette, Indiana, United States of America.ORCID 0000-0003-1047-6646
James A DutkoUniversity of Pennsylvania Perelman School of Medicine, Philadelphia, Pennsylvania, United States of America.ORCID 0000-0001-9835-7531
Mary C MullinsUniversity of Pennsylvania Perelman School of Medicine, Philadelphia, Pennsylvania, United States of America.ORCID 0000-0002-9979-1564
David M UmulisAgricultural and Biological Engineering, Purdue University, West Lafayette, Indiana, United States of America.ORCID 0000-0003-1913-2284

Funding

DORSAL/VENTRAL PATTERN FORMATION IN THE ZEBRAFISH EMBRYOR01GM056326 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI MULLINS, MARY C. · 1997 to 2018
$6.3M
Oocyte polarity and BMP-mediated dorsoventral patterningR35GM131908 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI Mary C. Mullins · 2019 to 2026
$5.6M
Modeling and analysis of BMP-mediated Dorsal/Ventral patterning in zebrafish embryosR01GM132501 · NIGMS · PURDUE UNIVERSITY · PI UMULIS, DAVID MICHAEL · 2019 to 2022
$1.4M
NIGMS NIH HHS R01 GM056326NIGMS NIH HHS R01 GM132501NIGMS NIH HHS R35 GM131908
6 · The paper itself

Abstract

Numerous stages of organismal development rely on the cellular interpretation of gradients of secreted morphogens including members of the Bone Morphogenetic Protein (BMP) family through transmembrane receptors. Early gradients of BMPs drive dorsal/ventral patterning throughout the animal kingdom in both vertebrates and invertebrates. Growing evidence in Drosophila, zebrafish, murine and other systems suggests that BMP ligand heterodimers are the primary BMP signaling ligand, even in systems in which mixtures of BMP homodimers and heterodimers are present. Signaling by heterodimers occurs through a hetero-tetrameric receptor complex comprising of two distinct type one BMP receptors and two type II receptors. To understand the system dynamics and determine whether kinetic assembly of heterodimer-heterotetramer BMP complexes is favored, as compared to other plausible BMP ligand-receptor configurations, we developed a kinetic model for BMP tetramer formation based on current measurements for binding rates and affinities. We find that contrary to a common hypothesis, heterodimer-heterotetramer formation is not kinetically favored over the formation of homodimer-tetramer complexes under physiological conditions of receptor and ligand concentrations and therefore other mechanisms, potentially including differential kinase activities of the formed heterotetramer complexes, must be the cause of heterodimer-heterotetramer signaling primacy. Further, although BMP complex assembly favors homodimer and homomeric complex formation over a wide range of parameters, ignoring these signals and instead relying on the heterodimer improves the range of morphogen interpretation in a broad set of conditions, suggesting a performance advantage for heterodimer signaling in patterning multiple cell types in a gradient.

Indexed as

Models, BiologicalAnimalsBiophysical PhenomenaBone Morphogenetic Protein ReceptorsBone Morphogenetic ProteinsComputational BiologyComputer SimulationLigandsModels, MolecularMorphogenesisProtein MultimerizationProtein Structure, QuaternarySignal TransductionBone Morphogenetic Protein ReceptorsBone Morphogenetic ProteinsLigands

Identifiers

PMID34591841
PMCPMC8509922

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.