Evidence map›Paper›PMID 34591683›Full record

ArticleMicrobiology resource announcements2021

Draft Genome Sequence of Streptococcus salivarius AGIRA0003, Isolated from Functional Gastrointestinal Disorder Duodenal Tissue.

Emily C Hoedt, Erin R Shanahan, Simon Keely, Ayesha Shah, Grace L Burns, Gerald J Holtmann, Nicholas J Talley, Mark Morrison

Abstract read
In one paragraph

Article in Microbiology resource announcements, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Duodenal microbiota profiling and its effects on gastrointestinal tract dysfunction.Frontiers in cellular and infection microbiology · 2026
    Article
  2. Review
  3. Review
  4. Role of the duodenal microbiota in functional dyspepsia.Neurogastroenterology and motility · 2022
    Review
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Emily C HoedtViruses, Infection, Immunity, Vaccine and Asthma (VIVA) Program, Hunter Medical Research Institute (HMRI), Newcastle, New South Wales, Australia.ORCID 0000-0003-2715-7588
Erin R ShanahanDepartment of Gastroenterology and Hepatology, Princess Alexandra Hospital, Woolloongabba, Queensland, Australia.
Simon KeelyViruses, Infection, Immunity, Vaccine and Asthma (VIVA) Program, Hunter Medical Research Institute (HMRI), Newcastle, New South Wales, Australia.
Ayesha ShahDepartment of Gastroenterology and Hepatology, Princess Alexandra Hospital, Woolloongabba, Queensland, Australia.
Grace L BurnsViruses, Infection, Immunity, Vaccine and Asthma (VIVA) Program, Hunter Medical Research Institute (HMRI), Newcastle, New South Wales, Australia.
Gerald J HoltmannNHMRC Centre of Research Excellence (CRE) in Digestive Health, HMRI, Newcastle, New South Wales, Australia.
Nicholas J TalleyViruses, Infection, Immunity, Vaccine and Asthma (VIVA) Program, Hunter Medical Research Institute (HMRI), Newcastle, New South Wales, Australia.
Mark MorrisonNHMRC Centre of Research Excellence (CRE) in Digestive Health, HMRI, Newcastle, New South Wales, Australia.

Funding

Department of Health, Australian Government | National Health and Medical Research Council (NHMRC) GNT1084544PA Research Foundation (Princess Alexandra Research Foundation) DVCR4476
6 · The paper itself

Abstract

Patients suffering functional dyspepsia symptoms have been shown to possess a greater relative abundance of Streptococcus compared to asymptomatic controls. Here, we describe the isolation and genomic features of a new Streptococcus isolate, from the duodenal tissue of a subject reporting dyspeptic symptoms, taxonomically assigned to Streptococcus salivarius and designated strain AGIRA0003.

Identifiers

PMID34591683
PMCPMC8483661

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.