Evidence map›Paper›PMID 34591618›Full record

ArticleScience (New York, N.Y.)2021

The stress-sensing domain of activated IRE1α forms helical filaments in narrow ER membrane tubes.

Ngoc-Han Tran, Stephen D Carter, Ann De Mazière, Avi Ashkenazi, Judith Klumperman, Peter Walter, Grant J Jensen

Abstract read
In one paragraph

Article in Science (New York, N.Y.), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Ngoc-Han Tran *Department of Biochemistry and Biophysics, University of California, San Francisco, San Francisco, CA, USA.ORCID 0000-0003-0638-2583
Stephen D Carter *Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, USA.ORCID 0000-0002-4237-4276
Ann De MazièreSection Cell Biology, Center for Molecular Medicine, University Medical Center Utrecht, Utrecht, Netherlands.ORCID 0000-0001-8070-5104
Avi AshkenaziCancer Immunology, Genentech, Inc., South San Francisco, CA, USA.ORCID 0000-0002-6890-4589
Judith KlumpermanSection Cell Biology, Center for Molecular Medicine, University Medical Center Utrecht, Utrecht, Netherlands.ORCID 0000-0003-4835-6228
Peter WalterDepartment of Biochemistry and Biophysics, University of California, San Francisco, San Francisco, CA, USA.ORCID 0000-0002-6849-708X
Grant J JensenDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, USA.ORCID 0000-0003-1556-4864

Funding

Virus TransmissionP50AI150464 · NIAID · UNIVERSITY OF UTAH · PI SUNDQUIST, WESLEY I. · 2019 to 2021
$14.9M
MECHANISM OF PROTEIN TRANSLOCATION ACROSS MEMBRANESR01GM032384 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI STROUD, ROBERT M · 1985 to 2023
$7.6M
Imaging large macromolecular complexes inside cells with electron cryotomographyR35GM122588 · NIGMS · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI JENSEN, GRANT J · 2017 to 2020
$1.9M
NIAID NIH HHS P50 AI150464NIGMS NIH HHS R01 GM032384NIGMS NIH HHS R35 GM122588
6 · The paper itself

Abstract

The signaling network of the unfolded protein response (UPR) adjusts the protein-folding capacity of the endoplasmic reticulum (ER) according to need. The most conserved UPR sensor, IRE1α, spans the ER membrane and activates through oligomerization. IRE1α oligomers accumulate in dynamic foci. We determined the in situ structure of IRE1α foci by cryogenic correlated light and electron microscopy combined with electron cryo-tomography and complementary immuno–electron microscopy in mammalian cell lines. IRE1α foci localized to a network of narrow anastomosing ER tubes (diameter, ~28 nm) with complex branching. The lumen of the tubes contained protein filaments, which were likely composed of arrays of IRE1α lumenal domain dimers that were arranged in two intertwined, left-handed helices. This specialized ER subdomain may play a role in modulating IRE1α signaling.

Indexed as

Endoplasmic Reticulum StressUnfolded Protein ResponseCell Line, TumorCryoelectron MicroscopyEndoribonucleasesHumansProtein DomainsProtein MultimerizationProtein Serine-Threonine KinasesSignal TransductionEndoribonucleasesERN1 protein, humanProtein Serine-Threonine Kinases

Identifiers

PMID34591618
PMCPMC9041316

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.