Evidence map›Paper›PMID 34591459›Full record

ArticleJournal of the American Chemical Society2021

Recording Temporal Signals with Minutes Resolution Using Enzymatic DNA Synthesis.

Namita Bhan, Alec Callisto, Jonathan Strutz, Joshua Glaser, Reza Kalhor, Edward S Boyden, George Church, Konrad Kording, Keith E J Tyo

Abstract read
In one paragraph

Article in Journal of the American Chemical Society, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. A Massively ParallelACS synthetic biology · 2024
    Article
  8. Toward DNA-Based Recording of Biological Processes.International journal of molecular sciences · 2024
    Review
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Namita BhanDepartment of Chemical and Biological Engineering, Northwestern University, Evanston, Illinois 60208, United States.
Alec CallistoDepartment of Chemical and Biological Engineering, Northwestern University, Evanston, Illinois 60208, United States.ORCID 0000-0002-9556-7389
Jonathan StrutzDepartment of Chemical and Biological Engineering, Northwestern University, Evanston, Illinois 60208, United States.ORCID 0000-0003-0934-4283
Joshua GlaserCenter for Theoretical Neuroscience, Columbia University, New York, New York 10027, United States.
Reza KalhorDepartment of Biomedical Engineering, Center for Epigenetics, Johns Hopkins School of Medicine, Baltimore, Maryland 21205, United States.ORCID 0000-0002-5558-7545
Edward S BoydenDepartment of Brain and Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States.
George ChurchDepartment of Biomedical Engineering, Center for Epigenetics, Johns Hopkins School of Medicine, Baltimore, Maryland 21205, United States.
Konrad KordingDepartment of Neuroscience, University of Pennsylvania, Philadelphia, Pennsylvania 19104, United States.
Keith E J TyoDepartment of Chemical and Biological Engineering, Northwestern University, Evanston, Illinois 60208, United States.ORCID 0000-0002-2342-0687

Funding

Tumor Environment and Metastasis (TEAM) Research ProgramP30CA060553 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI LEONIDAS C. PLATANIAS · 1993 to 2026
$153.9M
Recording neural activities onto DNAR01MH103910 · NIMH · UNIVERSITY OF PENNSYLVANIA · PI BOYDEN, EDWARD S., CHURCH, GEORGE M · 2013 to 2017
$9.5M
Developing Capacity to Evaluate Training Programs via Development of Human, Institutional and Social CapitalT32GM008449 · NIGMS · NORTHWESTERN UNIVERSITY · PI LEONARD, JOSHUA NATHANIEL · 1993 to 2023
$7.8M
Whole-brain recording into nucleic acids using template-independent polymerasesUF1NS107697 · NINDS · NORTHWESTERN UNIVERSITY · PI TYO, KEITH EDWARD JAGGARD · 2018 to 2018
$1.7M
Acquisition of Amersham Typhoon 5 Variable-mode ImagerS10OD026963 · OD · NORTHWESTERN UNIVERSITY · PI GRIGORESCU, ARABELA A · 2019 to 2019
$143k
NCI NIH HHS P30 CA060553NIGMS NIH HHS T32 GM008449NIH HHS S10 OD026963NIMH NIH HHS R01 MH103910NINDS NIH HHS UF1 NS107697
6 · The paper itself

Abstract

Employing DNA as a high-density data storage medium has paved the way for next-generation digital storage and biosensing technologies. However, the multipart architecture of current DNA-based recording techniques renders them inherently slow and incapable of recording fluctuating signals with subhour frequencies. To address this limitation, we developed a simplified system employing a single enzyme, terminal deoxynucleotidyl transferase (TdT), to transduce environmental signals into DNA. TdT adds nucleotides to the 3'-ends of single-stranded DNA (ssDNA) in a template-independent manner, selecting bases according to inherent preferences and environmental conditions. By characterizing TdT nucleotide selectivity under different conditions, we show that TdT can encode various physiologically relevant signals such as Co

Indexed as

DNA NucleotidylexotransferaseDNA, Single-StrandedCalciumDNATime FactorsZincCalciumDNADNA NucleotidylexotransferaseDNA, Single-StrandedZinc

Identifiers

PMID34591459
PMCPMC8982284

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.