Evidence map›Paper›PMID 34590677›Full record

ArticleThe Biochemical journal2021

Cryo-EM structure of the monomeric Rhodobacter sphaeroides RC-LH1 core complex at 2.5 Å.

Pu Qian, David J K Swainsbury, Tristan I Croll, Jack H Salisbury, Elizabeth C Martin, Philip J Jackson, Andrew Hitchcock, Pablo Castro-Hartmann, Kasim Sader, C Neil Hunter

Open access · hybridAbstract read
In one paragraph

Article in The Biochemical journal, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
3.7field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 58 citations in OpenAlex.

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  14. Tuning by Hydrogen Bonding in Photosynthesis.The journal of physical chemistry. B · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 5 countries.

Pu QianMaterials and Structural Analysis, Thermo Fisher Scientific, Achtseweg Noord 5, 5651 GG Eindhoven, Netherlands.ORCID 0000-0002-5888-8546
David J K SwainsburyDepartment of Molecular Biology and Biotechnology, University of Sheffield, Sheffield, U.K.ORCID 0000-0002-0754-0363
Tristan I CrollCambridge Institute for Medical Research, University of Cambridge, Cambridge CB2 0XY, U.K.ORCID 0000-0002-3514-8377
Jack H SalisburyDepartment of Molecular Biology and Biotechnology, University of Sheffield, Sheffield, U.K.ORCID 0000-0002-9527-0593
Elizabeth C MartinDepartment of Molecular Biology and Biotechnology, University of Sheffield, Sheffield, U.K.ORCID 0000-0001-9600-7298
Philip J JacksonDepartment of Molecular Biology and Biotechnology, University of Sheffield, Sheffield, U.K.ORCID 0000-0001-9671-2472
Andrew HitchcockDepartment of Molecular Biology and Biotechnology, University of Sheffield, Sheffield, U.K.ORCID 0000-0001-6572-434X
Pablo Castro-HartmannMaterials and Structural Analysis, Thermo Fisher Scientific, Achtseweg Noord 5, 5651 GG Eindhoven, Netherlands.ORCID 0000-0002-8991-9560
Kasim SaderMaterials and Structural Analysis, Thermo Fisher Scientific, Achtseweg Noord 5, 5651 GG Eindhoven, Netherlands.ORCID 0000-0002-8517-5410
C Neil HunterDepartment of Molecular Biology and Biotechnology, University of Sheffield, Sheffield, U.K.ORCID 0000-0003-2533-9783
University of Sheffield · GBThermo Fisher Scientific (Netherlands) · NLUniversity of Cambridge · GB

Funding

Biotechnology and Biological Sciences Research Council BB/M000265/1Wellcome Trust 209407/Z/17/Z
6 · The paper itself

Abstract

Reaction centre light-harvesting 1 (RC-LH1) complexes are the essential components of bacterial photosynthesis. The membrane-intrinsic LH1 complex absorbs light and the energy migrates to an enclosed RC where a succession of electron and proton transfers conserves the energy as a quinol, which is exported to the cytochrome bc1 complex. In some RC-LH1 variants quinols can diffuse through small pores in a fully circular, 16-subunit LH1 ring, while in others missing LH1 subunits create a gap for quinol export. We used cryogenic electron microscopy to obtain a 2.5 Å resolution structure of one such RC-LH1, a monomeric complex from Rhodobacter sphaeroides. The structure shows that the RC is partly enclosed by a 14-subunit LH1 ring in which each αβ heterodimer binds two bacteriochlorophylls and, unusually for currently reported complexes, two carotenoids rather than one. Although the extra carotenoids confer an advantage in terms of photoprotection and light harvesting, they could impede passage of quinones through small, transient pores in the LH1 ring, necessitating a mechanism to create a dedicated quinone channel. The structure shows that two transmembrane proteins play a part in stabilising an open ring structure; one of these components, the PufX polypeptide, is augmented by a hitherto undescribed protein subunit we designate as protein-Y, which lies against the transmembrane regions of the thirteenth and fourteenth LH1α polypeptides. Protein-Y prevents LH1 subunits 11-14 adjacent to the RC QB site from bending inwards towards the RC and, with PufX preventing complete encirclement of the RC, this pair of polypeptides ensures unhindered quinone diffusion.

Indexed as

Bacterial ProteinsBacteriochlorophyllsBinding SitesCarotenoidsCryoelectron MicroscopyGene ExpressionHydroquinonesLightLight-Harvesting Protein ComplexesModels, MolecularPeptidesPhotosynthesisPhotosynthetic Reaction Center Complex ProteinsProtein BindingProtein Conformation, alpha-HelicalProtein Conformation, beta-StrandBacterial ProteinsBacteriochlorophyllsCarotenoidsHydroquinonesLight-Harvesting Protein ComplexesPeptidesPhotosynthetic Reaction Center Complex ProteinsProtein SubunitsPufX protein, Rhodobacterbacteriochlorophyllcarotenoidlight harvestingphotosynthesisquinonereaction centre

Identifiers

PMID34590677
PMCPMC8589327
OpenAlexW3202193759

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.