Evidence map›Paper›PMID 34590014›Full record

ArticleJTO clinical and research reports2021

Genomic and Transcriptomic Characterization of Relapsed SCLC Through Rapid Research Autopsy.

Hui-Zi Chen, Russell Bonneville, Anoosha Paruchuri, Julie W Reeser, Michele R Wing, Eric Samorodnitsky, Melanie A Krook, Amy M Smith, Thuy Dao, Jharna Miya and 9 more

Open access · goldAbstract read
In one paragraph

Article in JTO clinical and research reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.3field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Article
  6. Review
  7. Mechanisms of immunotherapy resistance in small cell lung cancer.Cancer drug resistance (Alhambra, Calif.) · 2024
    Review
  8. Entinostat Enhances the Efficacy of Chemotherapy in Small Cell Lung Cancer Through S-phase Arrest and Decreased Base Excision Repair.Clinical cancer research : an official journal of the American Association for Cancer Research · 2023
    Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Halofuginone Sensitizes Lung Cancer Organoids to CisplatinFrontiers in cell and developmental biology · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 4 institutions in 1 country.

Hui-Zi ChenDivision of Hematology and Oncology, Department of Medicine, Medical College of Wisconsin, Milwaukee, Wisconsin.
Russell BonnevilleDivision of Medical Oncology, Department of Internal Medicine, Comprehensive Cancer Center, The Ohio State University, Columbus, Ohio.
Anoosha ParuchuriDivision of Medical Oncology, Department of Internal Medicine, Comprehensive Cancer Center, The Ohio State University, Columbus, Ohio.
Julie W ReeserDivision of Medical Oncology, Department of Internal Medicine, Comprehensive Cancer Center, The Ohio State University, Columbus, Ohio.
Michele R WingDivision of Medical Oncology, Department of Internal Medicine, Comprehensive Cancer Center, The Ohio State University, Columbus, Ohio.
Eric SamorodnitskyDivision of Medical Oncology, Department of Internal Medicine, Comprehensive Cancer Center, The Ohio State University, Columbus, Ohio.
Melanie A KrookDivision of Medical Oncology, Department of Internal Medicine, Comprehensive Cancer Center, The Ohio State University, Columbus, Ohio.
Amy M SmithDivision of Medical Oncology, Department of Internal Medicine, Comprehensive Cancer Center, The Ohio State University, Columbus, Ohio.
Thuy DaoDivision of Medical Oncology, Department of Internal Medicine, Comprehensive Cancer Center, The Ohio State University, Columbus, Ohio.
Jharna MiyaDivision of Medical Oncology, Department of Internal Medicine, Comprehensive Cancer Center, The Ohio State University, Columbus, Ohio.
Walter WangMedical Scientist Training Program, The Ohio State University, Columbus, Ohio.
Lianbo YuDepartment of Biomedical Informatics, The Ohio State University, Columbus, Ohio.
Aharon G FreudDivision of Hematopathology, Department of Pathology, The Ohio State University, Columbus, Ohio.
Patricia AllenbyDivision of Autopsy Services, Department of Pathology, The Ohio State University, Columbus, Ohio.
Sharon ColeOrion Cancer Care, Inc., Blanchard Valley Health System, Findlay, Ohio.
Gregory OttersonDivision of Medical Oncology, Department of Internal Medicine, Comprehensive Cancer Center, The Ohio State University, Columbus, Ohio.
Peter ShieldsDivision of Medical Oncology, Department of Internal Medicine, Comprehensive Cancer Center, The Ohio State University, Columbus, Ohio.
David P CarboneDivision of Medical Oncology, Department of Internal Medicine, Comprehensive Cancer Center, The Ohio State University, Columbus, Ohio.
Sameek RoychowdhuryDivision of Medical Oncology, Department of Internal Medicine, Comprehensive Cancer Center, The Ohio State University, Columbus, Ohio.
The Ohio State University · USBlanchard Valley Health System · USMedical College of Wisconsin · USThe Ohio State University Comprehensive Cancer Center – Arthur G. James Cancer Hospital and Richard J. Solove Research Institute · US

Funding

NRSA Training CoreTL1TR002735 · NCATS · OHIO STATE UNIVERSITY · PI BUMGARDNER, GINNY L, KIRSCHNER, LAWRENCE S · 2018 to 2022
$1.3M
Genomic characterization of tumor heterogeneity in recurrent small cell lung cancer through research autopsyK08CA241309 · NCI · OHIO STATE UNIVERSITY · PI CHEN, HUI-ZI · 2019 to 2023
$1.2M
Detection of microsatellite instability biomarkers for therapeutic clinical trial eligibilityUH2CA216432 · NCI · OHIO STATE UNIVERSITY · PI ROYCHOWDHURY, SAMEEK · 2017 to 2017
$354k
Assay Validation of Targeted RNA sequencing to Detect Kinase Gene FusionsUH2CA202971 · NCI · OHIO STATE UNIVERSITY · PI ROYCHOWDHURY, SAMEEK · 2016 to 2016
$352k
NCATS NIH HHS TL1 TR002735NCI NIH HHS K08 CA241309NCI NIH HHS UH2 CA202971NCI NIH HHS UH2 CA216432
6 · The paper itself

Abstract

introductionRelapsed SCLC is characterized by therapeutic resistance and high mortality rate. Despite decades of research, mechanisms responsible for therapeutic resistance have remained elusive owing to limited tissues available for molecular studies. Thus, an unmet need remains for molecular characterization of relapsed SCLC to facilitate development of effective therapies.

methodsWe performed whole-exome and transcriptome sequencing of metastatic tumor samples procured from research autopsies of five patients with relapsed SCLC. We implemented bioinformatics tools to infer subclonal phylogeny and identify recurrent genomic alterations. We implemented immune cell signature and single-sample gene set enrichment analyses on tumor and normal transcriptome data from autopsy and additional primary and relapsed SCLC data sets. Furthermore, we evaluated T cell-inflamed gene expression profiles in neuroendocrine (

resultsExome sequencing revealed clonal heterogeneity (intertumor and intratumor) arising from branched evolution and identified resistance-associated truncal and subclonal alterations in relapsed SCLC. Transcriptome analyses further revealed a noninflamed phenotype in neuroendocrine SCLC subtypes (

conclusionsOur results reveal substantial tumor heterogeneity and complex clonal evolution in relapsed SCLC. Furthermore, we report that neuroendocrine SCLC subtypes are immunologically cold, thus explaining decreased responsiveness to immune checkpoint blockade. These results suggest that the mechanisms of innate and acquired therapeutic resistances are subtype-specific in SCLC and highlight the need for continued investigation to bolster therapy selection and development for this cancer.

Indexed as

Research autopsySmall cell lung cancerTreatment resistanceTumor heterogeneity

Identifiers

PMID34590014
PMCPMC8474405
OpenAlexW3135652753

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.