Evidence map›Paper›PMID 34588515›Full record

Observational studyScientific reports2021

Whole exome sequencing in 17 consanguineous Iranian pedigrees expands the mutational spectrum of inherited retinal dystrophies.

Atta Ur Rehman, Neda Sepahi, Nicola Bedoni, Zeinab Ravesh, Arash Salmaninejad, Francesca Cancellieri, Virginie G Peter, Mathieu Quinodoz, Majid Mojarrad, Alireza Pasdar and 6 more

Open access · goldAbstract readObservational Study
In one paragraph

Observational study in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.5field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 11 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 7 institutions in 3 countries.

Atta Ur Rehman *Division of Genetic Medicine, Lausanne University Hospital and University of Lausanne, Lausanne, Switzerland.
Neda Sepahi *Noncommunicable Diseases Research Center, Fasa University of Medical Sciences, Fasa, Iran.
Nicola Bedoni *Division of Genetic Medicine, Lausanne University Hospital and University of Lausanne, Lausanne, Switzerland.
Zeinab RaveshDepartment of Genetics and Genome Biology, University of Leicester, Leicester, UK.
Arash SalmaninejadDepartment of Medical Genetics and Molecular Medicine, Faculty of Medicine, Mashhad University of Medical Sciences, Mashhad, Iran.
Francesca CancellieriInstitute of Molecular and Clinical Ophthalmology Basel (IOB), Basel, Switzerland.
Virginie G PeterDepartment of Genetics and Genome Biology, University of Leicester, Leicester, UK.
Mathieu QuinodozDepartment of Genetics and Genome Biology, University of Leicester, Leicester, UK.
Majid MojarradDepartment of Medical Genetics and Molecular Medicine, Faculty of Medicine, Mashhad University of Medical Sciences, Mashhad, Iran.
Alireza PasdarDepartment of Medical Genetics and Molecular Medicine, Faculty of Medicine, Mashhad University of Medical Sciences, Mashhad, Iran.
Ali Ghanbari AsadNoncommunicable Diseases Research Center, Fasa University of Medical Sciences, Fasa, Iran.
Saman GhalamkariPersian Bayangene Research and Training Institute, Shiraz, Iran.
Mehran PiranNoncommunicable Diseases Research Center, Fasa University of Medical Sciences, Fasa, Iran.
Mehrdad PiranNoncommunicable Diseases Research Center, Fasa University of Medical Sciences, Fasa, Iran.
Andrea Superti-FurgaDivision of Genetic Medicine, Lausanne University Hospital and University of Lausanne, Lausanne, Switzerland.
Carlo RivoltaDepartment of Genetics and Genome Biology, University of Leicester, Leicester, UK. carlo.rivolta@iob.ch.
Fasa University of Medical Sciences · IRUniversity of Lausanne · CHMashhad University of Medical Sciences · IRUniversity of Basel · CHInstitute of Molecular and Clinical Ophthalmology Basel · CHUniversity of Aberdeen · GBUniversity of Leicester · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Inherited retinal dystrophies (IRDs) constitute one of the most heterogeneous groups of Mendelian human disorders. Using autozygome-guided next-generation sequencing methods in 17 consanguineous pedigrees of Iranian descent with isolated or syndromic IRD, we identified 17 distinct genomic variants in 11 previously-reported disease genes. Consistent with a recessive inheritance pattern, as suggested by pedigrees, variants discovered in our study were exclusively bi-allelic and mostly in a homozygous state (in 15 families out of 17, or 88%). Out of the 17 variants identified, 5 (29%) were never reported before. Interestingly, two mutations (GUCY2D:c.564dup, p.Ala189ArgfsTer130 and TULP1:c.1199G > A, p.Arg400Gln) were also identified in four separate pedigrees (two pedigrees each). In addition to expanding the mutational spectrum of IRDs, our findings confirm that the traditional practice of endogamy in the Iranian population is a prime cause for the appearance of IRDs.

Indexed as

ConsanguinityDNA Mutational AnalysisExome SequencingEye Diseases, HereditaryEye ProteinsFemaleGene FrequencyGuanylate CyclaseHumansIranMaleMutationPedigreeReceptors, Cell SurfaceRetinal DystrophiesEye ProteinsGuanylate Cyclaseguanylate cyclase 1Receptors, Cell SurfaceTULP1 protein, human

Identifiers

PMID34588515
PMCPMC8481312
OpenAlexW3203034712

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.