Evidence map›Paper›PMID 34588480›Full record

ArticleScientific reports2021

Strain maps characterize the symmetry of convergence and extension patterns during zebrafish gastrulation.

Dipanjan Bhattacharya, Jun Zhong, Sahar Tavakoli, Alexandre Kabla, Paul Matsudaira

Abstract read
In one paragraph

Article in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Review
  2. Review
  3. Cellular mechanisms of traumatic brain injury.npj biological physics and mechanics · 2025
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  5. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Dipanjan Bhattacharya *Center for BioImaging Sciences (CBIS), Department of Biological Sciences, National University of Singapore, Singapore, 117543, Singapore. dipanjan.bhattacharya@ifom.eu.
Jun Zhong *Center for BioImaging Sciences (CBIS), Department of Biological Sciences, National University of Singapore, Singapore, 117543, Singapore.
Sahar TavakoliCenter for BioImaging Sciences (CBIS), Department of Biological Sciences, National University of Singapore, Singapore, 117543, Singapore.
Alexandre KablaDepartment of Engineering, University of Cambridge, Cambridge, CB2 1PZ, UK.
Paul MatsudairaCenter for BioImaging Sciences (CBIS), Department of Biological Sciences, National University of Singapore, Singapore, 117543, Singapore.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

During gastrulation of the zebrafish embryo, the cap of blastoderm cells organizes into the axial body plan of the embryo with left-right symmetry and head-tail, dorsal-ventral polarities. Our labs have been interested in the mechanics of early development and have investigated whether these large-scale cell movements can be described as tissue-level mechanical strain by a tectonics-based approach. The first step is to image the positions of all nuclei from mid-epiboly to early segmentation by digital sheet light microscopy, organize the surface of the embryo into multi-cell spherical domains, construct velocity fields from the movements of these domains and extract strain rate maps from the change in density of the domains. During gastrulation, tensile/expansive and compressive strains in the axial and equatorial directions are detected as anterior and posterior expansion along the anterior-posterior axis and medial-lateral compression across the dorsal-ventral axis and corresponds to the well characterized morphological movements of convergence and extension. Following gastrulation strain is represented by localized medial expansion at the onset of segmentation and anterior expansion at the onset of neurulation. In addition to linear strain, symmetric patterns of rotation/curl are first detected in the animal hemispheres at mid-epiboly and then the vegetal hemispheres by the end of gastrulation. In embryos treated with C59, a Wnt inhibitor that inhibits head and tail extension, the axial extension and vegetal curl are absent. By analysing the temporal sequence of large-scale movements, deformations across the embryo can be attributed to a combination of epiboly and dorsal convergence-extension.

Indexed as

AnimalsBenzeneacetamidesBody PatterningCell MovementEmbryo, NonmammalianGastrulationIntravital MicroscopyPyridinesWnt ProteinsZebrafishZebrafish Proteins2-(4-(2-methylpyridin-4-yl)phenyl)-N-(4-(pyridin-3-yl)phenyl)acetamideBenzeneacetamidesPyridinesWnt ProteinsZebrafish Proteins

Identifiers

PMID34588480
PMCPMC8481280

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.