Evidence map›Paper›PMID 34588478›Full record

ArticleScientific reports2021

Fast data-driven learning of parallel MRI sampling patterns for large scale problems.

Marcelo V W Zibetti, Gabor T Herman, Ravinder R Regatte

Abstract read
In one paragraph

Article in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Article
  2. Scan-Adaptive MRI Undersampling Using Neighbor-based Optimization (SUNO).IEEE transactions on computational imaging · 2026
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  16. Optimization of spin-lock times in TMagnetic resonance in medicine · 2022
    Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Marcelo V W ZibettiCenter for Biomedical Imaging, Department of Radiology, New York University School of Medicine, New York, NY, 10016, USA. Marcelo.WustZibetti@nyulangone.org.
Gabor T HermanCenter for Biomedical Imaging, Department of Radiology, New York University School of Medicine, New York, NY, 10016, USA.
Ravinder R RegatteCenter for Biomedical Imaging, Department of Radiology, New York University School of Medicine, New York, NY, 10016, USA.

Funding

TR&D 4: Revealing Microstructure: Biophysical modeling and validation for discovery and clinical careP41EB017183 · NIBIB · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI Daniel K Sodickson · 2014 to 2026
$19.3M
Multiparametric Mapping of Knee Joint with Magnetic Resonance FingerprintingR01AR076985 · NIAMS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI REGATTE, RAVINDER · 2021 to 2025
$3.1M
Imaging Biomarkers of Knee OsteoarthritisR01AR068966 · NIAMS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI REGATTE, RAVINDER · 2016 to 2021
$3.1M
Rapid Quantitative Assessment of Knee Joint with Compressed SensingR01AR076328 · NIAMS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI REGATTE, RAVINDER · 2020 to 2024
$3.0M
Data-Driven Learning Framework for Fast Quantitative Knee Joint MappingR01AR078308 · NIAMS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI Ravinder Regatte, Marcelo Victor Wust Zibetti · 2021 to 2026
$2.6M
Zero Echo Time Imaging of Knee JointR21AR075259 · NIAMS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI REGATTE, RAVINDER · 2020 to 2021
$403k
NIAMS NIH HHS R01 AR068966NIAMS NIH HHS R01 AR076328NIAMS NIH HHS R01 AR076985NIAMS NIH HHS R01 AR078308NIAMS NIH HHS R21 AR075259NIBIB NIH HHS P41 EB017183
6 · The paper itself

Abstract

In this study, a fast data-driven optimization approach, named bias-accelerated subset selection (BASS), is proposed for learning efficacious sampling patterns (SPs) with the purpose of reducing scan time in large-dimensional parallel MRI. BASS is applicable when Cartesian fully-sampled k-space measurements of specific anatomy are available for training and the reconstruction method for undersampled measurements is specified; such information is used to define the efficacy of any SP for recovering the values at the non-sampled k-space points. BASS produces a sequence of SPs with the aim of finding one of a specified size with (near) optimal efficacy. BASS was tested with five reconstruction methods for parallel MRI based on low-rankness and sparsity that allow a free choice of the SP. Three datasets were used for testing, two of high-resolution brain images ([Formula: see text]-weighted images and, respectively, [Formula: see text]-weighted images) and another of knee images for quantitative mapping of the cartilage. The proposed approach has low computational cost and fast convergence; in the tested cases it obtained SPs up to 50 times faster than the currently best greedy approach. Reconstruction quality increased by up to 45% over that provided by variable density and Poisson disk SPs, for the same scan time. Optionally, the scan time can be nearly halved without loss of reconstruction quality. Quantitative MRI and prospective accelerated MRI results show improvements. Compared with greedy approaches, BASS rapidly learns effective SPs for various reconstruction methods, using larger SPs and larger datasets; enabling better selection of sampling-reconstruction pairs for specific MRI problems.

Indexed as

Magnetic Resonance ImagingBrainData ScienceDatasets as TopicHumansImage Processing, Computer-AssistedKnee

Identifiers

PMID34588478
PMCPMC8481566

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.