Evidence map›Paper›PMID 34585272›Full record

ArticleArchives of microbiology2021

Complete genome sequence of Microbulbifer sp. YPW1 from mangrove sediments in Yanpu harbor, China.

Dingquan Wang, Jianxin Wang, Bonian Shui, Longqiang Zhu, Jiangqi Wang, Linxi Jin, Wu Qu

Abstract read
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In one paragraph

Article in Archives of microbiology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.5field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 3 citations in OpenAlex.

  1. Polymer degrading marineBeilstein journal of organic chemistry · 2024
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Dingquan Wang *Marine Science and Technology College, Zhejiang Ocean University, Zhoushan, China.
Jianxin Wang *Marine Science and Technology College, Zhejiang Ocean University, Zhoushan, China.
Bonian ShuiSchool of Fishery, Zhejiang Ocean University, Zhoushan, China.
Longqiang ZhuMarine Science and Technology College, Zhejiang Ocean University, Zhoushan, China.
Jiangqi WangMarine Science and Technology College, Zhejiang Ocean University, Zhoushan, China.
Linxi JinMarine Science and Technology College, Zhejiang Ocean University, Zhoushan, China.
Wu QuMarine Science and Technology College, Zhejiang Ocean University, Zhoushan, China. quwu2165@zjou.edu.cn.ORCID http://orcid.org/0000-0002-5405-2960
Zhejiang Ocean University · CN

Funding

College Students' Innovative Entrepreneurial Training Plan Program 202010340007Science and Technology Program of Zhoushan No. 2021C21009Technology Innovation Center for Exploitation of Marine Biological Resources, MNR No. TICMBR202102
6 · The paper itself

Abstract

In this work, a strain named YPW1 was isolated from the sediments of an artificial mangrove in Yanpu harbor, China. A complete genome of YPW1 was sequenced and assembled. The 16S rRNA gene assigned strain YPW1 into genus Microbulbifer, and the maximum values of average nucleotide identity and digital DNA-DNA hybridization of ZHDP1 genome were 90.36 and 68.1, respectively, indicating that YPW1 was a potential new species in genus Microbulbifer. A total of 10 representative genomes from genus Microbulbifer were selected to compare with YPW1. The results showed that the genome of strain YPW1 possessed more carbohydrate-active enzyme genes to transform various recalcitrant polysaccharides into bioavailable monosaccharides than those of the selected genomes. Furthermore, among the selected genomes, YPW1 was the only strain with nitrate, nitrite, and nitric oxide reductases which could appoint nitrous oxide, a powerful greenhouse gas, as the end-product of its denitrification process. Therefore, strain YPW1 was a potential novel member of genus Microbulbifer with special ecological roles in the cycles of carbon and nitrogen in mangrove ecosystems.

Indexed as

EcosystemGeologic SedimentsBacterial Typing TechniquesBase CompositionChinaDNA, BacterialFatty AcidsPhylogenyRNA, Ribosomal, 16SSequence Analysis, DNADNA, BacterialFatty AcidsRNA, Ribosomal, 16SArtificial mangroveGreenhouse gasMicrobulbifer sp. YPW1Polysaccharide degradationWhole genome analysis

Identifiers

PMID34585272
OpenAlexW3171599568

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.