Evidence map›Paper›PMID 34584093›Full record

ArticleNature communications2021

Cryo-EM structure of the sodium-driven chloride/bicarbonate exchanger NDCBE.

Weiguang Wang, Kirill Tsirulnikov, Hristina R Zhekova, Gülru Kayık, Hanif Muhammad Khan, Rustam Azimov, Natalia Abuladze, Liyo Kao, Debbie Newman, Sergei Yu Noskov and 3 more

Erratum issuedAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed.

  1. Levetiracetam inhibits the NaActa physiologica (Oxford, England) · 2026
    Article
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  10. Inactivation mechanisms of NaCommunications biology · 2025
    Article
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  18. KInternational journal of molecular sciences · 2024
    Article
  19. The role of NaPflugers Archiv : European journal of physiology · 2024
    Review
  20. Biallelic variants in SLC4A10 encoding a sodium-dependent bicarbonate transporter lead to a neurodevelopmental disorder.Genetics in medicine : official journal of the American College of Medical Genetics · 2024
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors.

Weiguang WangDepartment of Medicine, Division of Nephrology, David Geffen School of Medicine, University of California, Los Angeles, CA, USA.
Kirill TsirulnikovDepartment of Medicine, Division of Nephrology, David Geffen School of Medicine, University of California, Los Angeles, CA, USA.
Hristina R ZhekovaCentre for Molecular Simulation, Department of Biological Sciences, University of Calgary, Calgary, Canada.
Gülru KayıkCentre for Molecular Simulation, Department of Biological Sciences, University of Calgary, Calgary, Canada.
Hanif Muhammad KhanCentre for Molecular Simulation, Department of Biological Sciences, University of Calgary, Calgary, Canada.
Rustam AzimovDepartment of Medicine, Division of Nephrology, David Geffen School of Medicine, University of California, Los Angeles, CA, USA.
Natalia AbuladzeDepartment of Medicine, Division of Nephrology, David Geffen School of Medicine, University of California, Los Angeles, CA, USA.
Liyo KaoDepartment of Medicine, Division of Nephrology, David Geffen School of Medicine, University of California, Los Angeles, CA, USA.
Debbie NewmanDepartment of Medicine, Division of Nephrology, David Geffen School of Medicine, University of California, Los Angeles, CA, USA.
Sergei Yu NoskovCentre for Molecular Simulation, Department of Biological Sciences, University of Calgary, Calgary, Canada.ORCID http://orcid.org/0000-0001-7769-335X
Z Hong ZhouElectron Imaging Center for Nanomachines, California NanoSystems Institute, University of California, Los Angeles, CA, USA.ORCID http://orcid.org/0000-0002-8373-4717
Alexander PushkinDepartment of Medicine, Division of Nephrology, David Geffen School of Medicine, University of California, Los Angeles, CA, USA.
Ira KurtzDepartment of Medicine, Division of Nephrology, David Geffen School of Medicine, University of California, Los Angeles, CA, USA. ikurtz@mednet.ucla.edu.

Funding

The Biology of NBCe1 in Health and DiseaseR01DK077162 · NIDDK · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI IRA KURTZ · 2007 to 2026
$6.7M
West/Midwest Consortium for High-Resolution Cryo Electron MicroscopyU24GM116792 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI AGBANDJE-MCKENNA, MAVIS, DOKLAND, TERJE · 2016 to 2020
$3.0M
Breakthrough Molecular Dynamics Research via an Anton2 SupercomputerR01GM116961 · NIGMS · CARNEGIE-MELLON UNIVERSITY · PI BLOOD, PHILIP D. · 2016 to 2023
$3.0M
HIGH-END CRYOEM INSTRUMENT FOR UCLA ELECTRON IMAGING CTR FOR NANOMACHINES: AIDSS10RR023057 · NCRR · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI ZHOU, Z HONG · 2006 to 2006
$1.6M
NCRR NIH HHS S10 RR023057NIDDK NIH HHS R01 DK077162NIGMS NIH HHS R01 GM116961NIGMS NIH HHS U24 GM116792
6 · The paper itself

Abstract

SLC4 transporters play significant roles in pH regulation and cellular sodium transport. The previously solved structures of the outward facing (OF) conformation for AE1 (SLC4A1) and NBCe1 (SLC4A4) transporters revealed an identical overall fold despite their different transport modes (chloride/bicarbonate exchange versus sodium-carbonate cotransport). However, the exact mechanism determining the different transport modes in the SLC4 family remains unknown. In this work, we report the cryo-EM 3.4 Å structure of the OF conformation of NDCBE (SLC4A8), which shares transport properties with both AE1 and NBCe1 by mediating the electroneutral exchange of sodium-carbonate with chloride. This structure features a fully resolved extracellular loop 3 and well-defined densities corresponding to sodium and carbonate ions in the tentative substrate binding pocket. Further, we combine computational modeling with functional studies to unravel the molecular determinants involved in NDCBE and SLC4 transport.

Indexed as

HEK293 CellsHumansRecombinant ProteinsSodium-Bicarbonate SymportersRecombinant ProteinsSLC4A8 protein, humanSodium-Bicarbonate Symporters

Identifiers

PMID34584093
PMCPMC8478935

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.