Evidence map›Paper›PMID 34584081›Full record

ArticleNature communications2021

The leukemic oncogene EVI1 hijacks a MYC super-enhancer by CTCF-facilitated loops.

Sophie Ottema, Roger Mulet-Lazaro, Claudia Erpelinck-Verschueren, Stanley van Herk, Marije Havermans, Andrea Arricibita Varea, Michael Vermeulen, H Berna Beverloo, Stefan Gröschel, Torsten Haferlach and 5 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
4.8field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 75 citations in OpenAlex.

  1. Article
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  8. Mechanisms of enhancer-driven oncogene activation.International journal of cancer · 2026
    Review
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  19. SJPedPanel: A Pan-Cancer Gene Panel for Childhood Malignancies to Enhance Cancer Monitoring and Early Detection.Clinical cancer research : an official journal of the American Association for Cancer Research · 2024
    Article
  20. Oncogenic Enhancers in Leukemia.Blood cancer discovery · 2024
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 5 institutions in 2 countries.

Sophie Ottema *Department of Hematology, Erasmus MC Cancer Institute, Rotterdam, The Netherlands.
Roger Mulet-Lazaro *Department of Hematology, Erasmus MC Cancer Institute, Rotterdam, The Netherlands.ORCID http://orcid.org/0000-0003-0298-7948
Claudia Erpelinck-Verschueren *Department of Hematology, Erasmus MC Cancer Institute, Rotterdam, The Netherlands.ORCID http://orcid.org/0000-0002-3965-4488
Stanley van HerkDepartment of Hematology, Erasmus MC Cancer Institute, Rotterdam, The Netherlands.ORCID http://orcid.org/0000-0002-8707-703X
Marije HavermansDepartment of Hematology, Erasmus MC Cancer Institute, Rotterdam, The Netherlands.
Andrea Arricibita VareaDepartment of Hematology, Erasmus MC Cancer Institute, Rotterdam, The Netherlands.
Michael VermeulenDepartment of Hematology, Erasmus MC Cancer Institute, Rotterdam, The Netherlands.
H Berna BeverlooDepartment of Clinical Genetics, Erasmus University Medical Center, Rotterdam, The Netherlands.
Stefan GröschelA380, German Cancer Research Center, Heidelberg, Germany.
Torsten HaferlachMunich Leukemia Laboratory, Munich, Germany.
Claudia HaferlachMunich Leukemia Laboratory, Munich, Germany.
Bas J WoutersDepartment of Hematology, Erasmus MC Cancer Institute, Rotterdam, The Netherlands.
Eric BindelsDepartment of Hematology, Erasmus MC Cancer Institute, Rotterdam, The Netherlands.
Leonie SmeenkDepartment of Hematology, Erasmus MC Cancer Institute, Rotterdam, The Netherlands.ORCID http://orcid.org/0000-0001-7025-8515
Ruud DelwelDepartment of Hematology, Erasmus MC Cancer Institute, Rotterdam, The Netherlands. h.delwel@erasmusmc.nl.
Oncode Institute · NLErasmus MC Cancer Institute · NLMunich Leukemia Laboratory (Germany) · DEErasmus MC · NLGerman Cancer Research Center · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Chromosomal rearrangements are a frequent cause of oncogene deregulation in human malignancies. Overexpression of EVI1 is found in a subgroup of acute myeloid leukemia (AML) with 3q26 chromosomal rearrangements, which is often therapy resistant. In AMLs harboring a t(3;8)(q26;q24), we observed the translocation of a MYC super-enhancer (MYC SE) to the EVI1 locus. We generated an in vitro model mimicking a patient-based t(3;8)(q26;q24) using CRISPR-Cas9 technology and demonstrated hyperactivation of EVI1 by the hijacked MYC SE. This MYC SE contains multiple enhancer modules, of which only one recruits transcription factors active in early hematopoiesis. This enhancer module is critical for EVI1 overexpression as well as enhancer-promoter interaction. Multiple CTCF binding regions in the MYC SE facilitate this enhancer-promoter interaction, which also involves a CTCF binding site upstream of the EVI1 promoter. We hypothesize that this CTCF site acts as an enhancer-docking site in t(3;8) AML. Genomic analyses of other 3q26-rearranged AML patient cells point to a common mechanism by which EVI1 uses this docking site to hijack enhancers active in early hematopoiesis.

Indexed as

Acute DiseaseCCCTC-Binding FactorChromosomes, Human, Pair 3Chromosomes, Human, Pair 8Enhancer Elements, GeneticGene Expression Regulation, LeukemicGene RearrangementHigh-Throughput Nucleotide SequencingHumansIn Situ Hybridization, FluorescenceK562 CellsKaryotypingLeukemia, MyeloidMDS1 and EVI1 Complex Locus ProteinPromoter Regions, GeneticProtein BindingCCCTC-Binding FactorMDS1 and EVI1 Complex Locus ProteinMECOM protein, humanProto-Oncogene Proteins c-myc

Identifiers

PMID34584081
PMCPMC8479123
OpenAlexW3203001305

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.