Evidence map›Paper›PMID 34584079›Full record

ArticleNature communications2021

Assembly defects of human tRNA splicing endonuclease contribute to impaired pre-tRNA processing in pontocerebellar hypoplasia.

Samoil Sekulovski, Pascal Devant, Silvia Panizza, Tasos Gogakos, Anda Pitiriciu, Katharina Heitmeier, Ewan Phillip Ramsay, Marie Barth, Carla Schmidt, Thomas Tuschl and 4 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
2.4field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 35 citations in OpenAlex.

  1. Article
  2. The regulation, function and disease relevance of cytoplasmic tRNAs.Nature reviews. Molecular cell biology · 2026
    Review
  3. Enzymology of the metazoan tRNA ligase complex: a lifetime in cycles.Cellular and molecular life sciences : CMLS · 2026
    Review
  4. Review
  5. Article
  6. Emerging roles of transfer RNA fragments in the CNS.Brain : a journal of neurology · 2025
    Review
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Review
  13. The life and times of a tRNA.RNA (New York, N.Y.) · 2023
    Review
  14. Article
  15. Article
  16. Article
  17. Captured: the elusive eukaryotic tRNA splicing enzyme.Nature structural & molecular biology · 2023
    Article
  18. Article
  19. The physiology of alternative splicing.Nature reviews. Molecular cell biology · 2023
    Review
  20. tRNA dysregulation and disease.Nature reviews. Genetics · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 6 institutions in 5 countries.

Samoil Sekulovski *Institute of Biochemistry, Biocenter, Goethe University Frankfurt, Frankfurt/Main, Germany.ORCID 0000-0002-6732-9236
Pascal Devant *Institute of Biochemistry, Biocenter, Goethe University Frankfurt, Frankfurt/Main, Germany.ORCID 0000-0001-9743-6764
Silvia Panizza *Max Perutz Labs, Medical University of Vienna, Vienna Biocenter (VBC), Vienna, Austria.
Tasos GogakosLaboratory for RNA Molecular Biology, The Rockefeller University, New York, NY, USA.
Anda PitiriciuInstitute of Biochemistry, Biocenter, Goethe University Frankfurt, Frankfurt/Main, Germany.
Katharina HeitmeierInstitute of Biochemistry, Biocenter, Goethe University Frankfurt, Frankfurt/Main, Germany.ORCID 0000-0001-6693-4947
Ewan Phillip RamsayThe Institute of Cancer Research, London, United Kingdom.
Marie BarthInterdisciplinary research center HALOmem, Charles Tanford Protein Center, Institute of Biochemistry and Biotechnology, Martin Luther University Halle-Wittenberg, Halle, Germany.ORCID 0000-0001-5006-9573
Carla SchmidtInterdisciplinary research center HALOmem, Charles Tanford Protein Center, Institute of Biochemistry and Biotechnology, Martin Luther University Halle-Wittenberg, Halle, Germany.ORCID 0000-0001-9410-1424
Thomas TuschlLaboratory for RNA Molecular Biology, The Rockefeller University, New York, NY, USA.ORCID 0000-0002-6483-5678
Frank BaasDepartment of Clinical Genetics, Leiden University, Leiden, Netherlands.
Stefan WeitzerMax Perutz Labs, Medical University of Vienna, Vienna Biocenter (VBC), Vienna, Austria.
Javier MartinezMax Perutz Labs, Medical University of Vienna, Vienna Biocenter (VBC), Vienna, Austria. javier.martinez@meduniwien.ac.at.ORCID 0000-0001-9152-7323
Simon TrowitzschInstitute of Biochemistry, Biocenter, Goethe University Frankfurt, Frankfurt/Main, Germany. trowitzsch@biochem.uni-frankfurt.de.ORCID 0000-0001-9143-766X
Goethe University Frankfurt · DEMax Perutz Labs · ATMartin Luther University Halle-Wittenberg · DERockefeller University · USInstitute of Cancer Research · GBLeiden University · NL

Funding

A nanoparticle delivery system for CRISPR/Cas9 based therapeuticsR42TR001711 · NCATS · ATGC, INC. · PI KURODA, KENICHI · 2017 to 2019
$1.7M
Austrian Science Fund FWF P 29888NCATS NIH HHS R42 TR001711
6 · The paper itself

Abstract

Introns of human transfer RNA precursors (pre-tRNAs) are excised by the tRNA splicing endonuclease TSEN in complex with the RNA kinase CLP1. Mutations in TSEN/CLP1 occur in patients with pontocerebellar hypoplasia (PCH), however, their role in the disease is unclear. Here, we show that intron excision is catalyzed by tetrameric TSEN assembled from inactive heterodimers independently of CLP1. Splice site recognition involves the mature domain and the anticodon-intron base pair of pre-tRNAs. The 2.1-Å resolution X-ray crystal structure of a TSEN15-34 heterodimer and differential scanning fluorimetry analyses show that PCH mutations cause thermal destabilization. While endonuclease activity in recombinant mutant TSEN is unaltered, we observe assembly defects and reduced pre-tRNA cleavage activity resulting in an imbalanced pre-tRNA pool in PCH patient-derived fibroblasts. Our work defines the molecular principles of intron excision in humans and provides evidence that modulation of TSEN stability may contribute to PCH phenotypes.

Indexed as

MutationRNA SplicingAnimalsCerebellar DiseasesCrystallography, X-RayEndonucleasesEndoribonucleasesHEK293 CellsHumansIntronsProtein ConformationProtein MultimerizationRNA PrecursorsRNA, TransferSaccharomyces cerevisiaeSf9 CellsEndonucleasesEndoribonucleasesRNA PrecursorsRNA, TransferTSEN15 protein, humanTSEN54 protein, human

Identifiers

PMID34584079
PMCPMC8479045
OpenAlexW3202860293

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.