Evidence map›Paper›PMID 34582782›Full record

ArticleCell host & microbe2021

Viral recombination systems limit CRISPR-Cas targeting through the generation of escape mutations.

Amer A Hossain, Jon McGinn, Alexander J Meeske, Joshua W Modell, Luciano A Marraffini

Open access · greenAbstract read
In one paragraph

Article in Cell host & microbe, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
1.5field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 27 citations in OpenAlex.

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  8. A minimal model of panimmunity maintenance by horizontal gene transfer in the ecological dynamics of bacteria and phages.Proceedings of the National Academy of Sciences of the United States of America · 2025
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  15. CRISPR-Cas12a exhibits metal-dependent specificity switching.bioRxiv : the preprint server for biology · 2024
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Amer A HossainLaboratory of Bacteriology, the Rockefeller University, 1230 York Ave, New York, NY 10065, USA.
Jon McGinnLaboratory of Bacteriology, the Rockefeller University, 1230 York Ave, New York, NY 10065, USA.
Alexander J MeeskeLaboratory of Bacteriology, the Rockefeller University, 1230 York Ave, New York, NY 10065, USA.
Joshua W ModellLaboratory of Bacteriology, the Rockefeller University, 1230 York Ave, New York, NY 10065, USA. Electronic address: jmodell@jhmi.edu.
Luciano A MarraffiniLaboratory of Bacteriology, the Rockefeller University, 1230 York Ave, New York, NY 10065, USA; Howard Hughes Medical Institute, the Rockefeller University, 1230 York Ave, New York, NY 10065, USA. Electronic address: marraffini@rockefeller.edu.
Rockefeller University · US

Funding

Generation of immunological memory by CRISPR-Cas systemsDP1GM128184 · NIGMS · ROCKEFELLER UNIVERSITY · PI MARRAFFINI, LUCIANO A · 2017 to 2021
$5.9M
NIGMS NIH HHS DP1 GM128184
6 · The paper itself

Abstract

CRISPR-Cas systems provide immunity to bacteria by programing Cas nucleases with RNA guides that recognize and cleave infecting viral genomes. Bacteria and their viruses each encode recombination systems that could repair the cleaved viral DNA. However, it is unknown whether and how these systems can affect CRISPR immunity. Bacteriophage λ uses the Red system (gam-exo-bet) to promote recombination between related phages. Here, we show that λ Red also mediates evasion of CRISPR-Cas targeting. Gam inhibits the host E. coli RecBCD recombination system, allowing recombination and repair of the cleaved DNA by phage Exo-Beta, which promotes the generation of mutations within the CRISPR target sequence. Red recombination is strikingly more efficient than the host's RecBCD-RecA in the production of large numbers of phages that escape CRISPR targeting. These results reveal a role for Red-like systems in the protection of bacteriophages against sequence-specific nucleases, which may facilitate their spread across viral genomes.

Indexed as

CRISPR-Cas SystemsMutationRecombination, GeneticBacteriophage lambdaEscherichia coliEscherichia coli ProteinsExodeoxyribonuclease VHost-Pathogen InteractionsViral ProteinsEscherichia coli ProteinsExodeoxyribonuclease Vexodeoxyribonuclease V, E coliViral ProteinsCas9CRISPRLambdarecombinationRed

Identifiers

PMID34582782
PMCPMC8516739
OpenAlexW3203762317

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.