Evidence map›Paper›PMID 34582469›Full record

ArticlePloS one2021

The molecular basis of extensively drug-resistant Salmonella Typhi isolates from pediatric septicemia patients.

Chanmi Kim, Iqra Latif, Durga P Neupane, Gi Young Lee, Ryan S Kwon, Alia Batool, Qasim Ahmed, Muhammad Usman Qamar, Jeongmin Song

Abstract read
In one paragraph

Article in PloS one, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Article
  2. Article
  3. Whole-Genome Sequencing Analysis of Drug-ResistantPathogens (Basel, Switzerland) · 2025
    Article
  4. Review
  5. Article
  6. Article
  7. Article
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  11. Review
  12. Article
  13. Article
  14. Bacterial AB toxins and host-microbe interactions.Advances in microbial physiology · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Chanmi KimDepartment of Microbiology and Immunology, College of Veterinary Medicine, Cornell University, Ithaca, New York, United States of America.ORCID 0000-0002-7105-5741
Iqra LatifFaculty of Life Sciences, Department of Microbiology, Government College University Faisalabad, Faisalabad, Pakistan.ORCID 0000-0002-5044-0683
Durga P NeupaneDepartment of Microbiology and Immunology, College of Veterinary Medicine, Cornell University, Ithaca, New York, United States of America.
Gi Young LeeDepartment of Microbiology and Immunology, College of Veterinary Medicine, Cornell University, Ithaca, New York, United States of America.ORCID 0000-0001-6016-6932
Ryan S KwonDepartment of Microbiology and Immunology, College of Veterinary Medicine, Cornell University, Ithaca, New York, United States of America.ORCID 0000-0003-3904-6893
Alia BatoolDepartment of Pathology, Fatima Memorial Hospital, Lahore, Pakistan.
Qasim AhmedDepartment of Pathology, Fatima Memorial Hospital, Lahore, Pakistan.ORCID 0000-0003-1565-0500
Muhammad Usman QamarFaculty of Life Sciences, Department of Microbiology, Government College University Faisalabad, Faisalabad, Pakistan.ORCID 0000-0002-2636-238X
Jeongmin SongDepartment of Microbiology and Immunology, College of Veterinary Medicine, Cornell University, Ithaca, New York, United States of America.ORCID 0000-0002-6777-3505

Funding

Salmonella Typhi: Enhancement of Endemic Potential through its Unique Virulence FactorsR01AI141514 · NIAID · CORNELL UNIVERSITY · PI SONG, JEONGMIN · 2019 to 2023
$3.2M
Cracking Salmonella Typhis Secret Code: Understanding Pathogenic Mechanisms of Salmonella Typhi ToxinR01AI137345 · NIAID · CORNELL UNIVERSITY · PI SONG, JEONGMIN · 2018 to 2022
$2.7M
Typhoid Vaccines Targeting Both Salmonella Typhi and Its Secreted Virulence FactorR01AI139625 · NIAID · CORNELL UNIVERSITY · PI SONG, JEONGMIN · 2018 to 2022
$2.0M
NIAID NIH HHS R01 AI137345NIAID NIH HHS R01 AI139625NIAID NIH HHS R01 AI141514
6 · The paper itself

Abstract

Sepsis is a syndromic response to infections and is becoming an emerging threat to the public health sector, particularly in developing countries. Salmonella Typhi (S. Typhi), the cause of typhoid fever, is one primary cause of pediatric sepsis in typhoid endemic areas. Extensively drug-resistant (XDR) S. Typhi is more common among pediatric patients, which is responsible for over 90% of the reported XDR typhoid cases, but the majority of antibiotic resistance studies available have been carried out using S. Typhi isolates from adult patients. Here, we characterized antibiotic-resistance profiles of XDR S. Typhi isolates from a medium size cohort of pediatric typhoid patients (n = 45, 68.89% male and 31.11% female) and determined antibiotic-resistance-related gene signatures associated with common treatment options to typhoid fever patients of 18 XDR S. Typhi representing all 45 isolates. Their ages were 1-13 years old: toddlers aging 1-2 years old (n = 9, 20%), pre-schoolers aging 3-5 years old (n = 17, 37.78%), school-age children aging 6-12 years old (n = 17, 37.78%), and adolescents aging 13-18 years old (n = 2, 4.44%). Through analyzing blaTEM1, dhfR7, sul1, and catA1genes for multidrug-resistance, qnrS, gyrA, gyrB, parC, and parE for fluoroquinolone-resistance, blaCTX-M-15 for XDR, and macAB and acrAB efflux pump system-associated genes, we showed the phenotype of the XDR S. Typhi isolates matches with their genotypes featured by the acquisitions of the genes blaTEM1, dhfR7, sul1, catA1, qnrS, and blaCTX-M-15 and a point mutation on gyrA. This study informs the molecular basis of antibiotic-resistance among recent S. Typhi isolates from pediatric septicemia patients, therefore providing insights into the development of molecular detection methods and treatment strategies for XDR S. Typhi.

Indexed as

Drug Resistance, Multiple, BacterialAdolescentAnti-Bacterial AgentsBacterial ProteinsChildChild, PreschoolCohort StudiesFemaleHumansInfantMalePoint MutationSalmonella typhiSepsisTyphoid FeverAnti-Bacterial AgentsBacterial Proteins

Identifiers

PMID34582469
PMCPMC8478237

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.