Evidence map›Paper›PMID 34581031›Full record

ArticleZoological research2021

Genome-wide scan for selective footprints and genes related to cold tolerance in Chantecler chickens.

Nai-Yi Xu, Wei Si, Ming Li, Mian Gong, Jean-Marc Larivière, Hojjat Asadollahpour Nanaei, Pei-Pei Bian, Yu Jiang, Xin Zhao

Open access · diamondAbstract read
In one paragraph

Article in Zoological research, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
9.0field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 55 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Nai-Yi XuKey Laboratory of Animal Genetics, Breeding and Reproduction of Shaanxi Province, College of Animal Science and Technology, Northwest A & F University, Yangling, Shaanxi 712100, China.
Wei SiDepartment of Animal Science, McGill University, Montreal, Quebec H9X3V9, Canada.
Ming LiKey Laboratory of Animal Genetics, Breeding and Reproduction of Shaanxi Province, College of Animal Science and Technology, Northwest A & F University, Yangling, Shaanxi 712100, China.
Mian GongKey Laboratory of Animal Genetics, Breeding and Reproduction of Shaanxi Province, College of Animal Science and Technology, Northwest A & F University, Yangling, Shaanxi 712100, China.
Jean-Marc LarivièreInstitut de technologie agroalimentaire du Québec, La Pocatière, Québec G0R1Z0, Canada.
Hojjat Asadollahpour NanaeiKey Laboratory of Animal Genetics, Breeding and Reproduction of Shaanxi Province, College of Animal Science and Technology, Northwest A & F University, Yangling, Shaanxi 712100, China.
Pei-Pei BianKey Laboratory of Animal Genetics, Breeding and Reproduction of Shaanxi Province, College of Animal Science and Technology, Northwest A & F University, Yangling, Shaanxi 712100, China.
Yu JiangKey Laboratory of Animal Genetics, Breeding and Reproduction of Shaanxi Province, College of Animal Science and Technology, Northwest A & F University, Yangling, Shaanxi 712100, China. E-mail:yu.jiang@nwafu.edu.cn.
Xin ZhaoKey Laboratory of Animal Genetics, Breeding and Reproduction of Shaanxi Province, College of Animal Science and Technology, Northwest A & F University, Yangling, Shaanxi 712100, China. E-mail:xin.zhao@mcgill.ca.
North West Agriculture and Forestry University · CNMcGill University · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Chantecler chicken, a unique Canadian indigenous breed, is well adapted to extremely cold environments. However, its genetic characteristics have not been well studied. Here, we analyzed the whole genomes of 10 Chantecler chickens and 121 worldwide chickens, which indicated that Chantecler chickens were derived from commercial chickens and exhibit a high level of inbreeding. Based on a genome-wide scan, we identified two vital candidate regions containing

Indexed as

Cold TemperatureAdaptation, PhysiologicalAnimalsChickensGenomeGenome-Wide Association StudyInbreedingNAD (+) and NADP (+) Dependent Alcohol OxidoreductasesNerve Tissue ProteinsPolymorphism, Single NucleotideRepressor ProteinsSelection, GeneticNAD (+) and NADP (+) Dependent Alcohol OxidoreductasesNerve Tissue ProteinsRepressor ProteinsChantecler chickensCold adaptationME3Whole-genome resequencingZNF536

Identifiers

PMID34581031
PMCPMC8645888
OpenAlexW3204879726

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.