Evidence map›Paper›PMID 34580671›Full record

ArticlebioRxiv : the preprint server for biology2021

A BioID-derived proximity interactome for SARS-CoV-2 proteins.

Danielle G May, Laura Martin-Sancho, Valesca Anschau, Sophie Liu, Rachel J Chrisopulos, Kelsey L Scott, Charles T Halfmann, Ramon Díaz Peña, Dexter Pratt, Alexandre R Campos and 1 more

Open access · greenAbstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 10 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 1 country.

Danielle G MayEnabling Technologies Group, Sanford Research, Sioux Falls, SD.
Laura Martin-SanchoSanford Burnham Prebys Medical Discovery Institute, La Jolla, CA.
Valesca AnschauSanford Burnham Prebys Medical Discovery Institute, La Jolla, CA.
Sophie LiuDivision of Genetics, Department of Medicine, University of California, San Diego, CA.
Rachel J ChrisopulosEnabling Technologies Group, Sanford Research, Sioux Falls, SD.
Kelsey L ScottEnabling Technologies Group, Sanford Research, Sioux Falls, SD.
Charles T HalfmannEnabling Technologies Group, Sanford Research, Sioux Falls, SD.
Ramon Díaz PeñaSanford Burnham Prebys Medical Discovery Institute, La Jolla, CA.
Dexter PrattDivision of Genetics, Department of Medicine, University of California, San Diego, CA.
Alexandre R CamposSanford Burnham Prebys Medical Discovery Institute, La Jolla, CA.
Kyle J RouxEnabling Technologies Group, Sanford Research, Sioux Falls, SD.
Sanford Burnham Prebys Medical Discovery Institute · USSanford Research · USUniversity of California San Diego · USUniversity of South Dakota · US

Funding

Tumor Microenvironment and Cancer ImmunologyP30CA030199 · NCI · SANFORD BURNHAM PREBYS MEDICAL DISCOVERY INSTITUTE · PI ELENA B PASQUALE · 1985 to 2026
$107.2M
Project 3 - Ex vivo immune profiling of dengue viruses and vaccinesU19AI118610 · NIAID · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI FERNANDEZ-SESMA, ANA · 2015 to 2021
$46.6M
SARS-CoV adaptations through a Systems Biology Lens (SYBIL)U19AI135972 · NIAID · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI Adolfo Garcia-Sastre · 2018 to 2026
$27.2M
Yeast 2 HybridP20GM103620 · NIGMS · SANFORD RESEARCH/USD · PI ROUX, KYLE J · 2013 to 2023
$24.2M
NDEx - the Network Data Exchange A Network Commons for BiologistsU24CA184427 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI PRATT, DEXTER · 2014 to 2021
$5.7M
Evolution and application of proximity protein labelingR35GM126949 · NIGMS · SANFORD RESEARCH/USD · PI ROUX, KYLE J · 2018 to 2022
$2.0M
NCI NIH HHS P30 CA030199NCI NIH HHS U24 CA184427NIAID NIH HHS U19 AI118610NIAID NIH HHS U19 AI135972NIGMS NIH HHS P20 GM103620NIGMS NIH HHS R35 GM126949
6 · The paper itself

Abstract

The novel coronavirus SARS-CoV-2 is responsible for the ongoing COVID-19 pandemic and has caused a major health and economic burden worldwide. Understanding how SARS-CoV-2 viral proteins behave in host cells can reveal underlying mechanisms of pathogenesis and assist in development of antiviral therapies. Here we use BioID to map the SARS-CoV-2 virus-host interactome using human lung cancer derived A549 cells expressing individual SARS-CoV-2 viral proteins. Functional enrichment analyses revealed previously reported and unreported cellular pathways that are in association with SARS-CoV-2 proteins. We have also established a website to host the proteomic data to allow for public access and continued analysis of host-viral protein associations and whole-cell proteomes of cells expressing the viral-BioID fusion proteins. Collectively, these studies provide a valuable resource to potentially uncover novel SARS-CoV-2 biology and inform development of antivirals.

Identifiers

PMID34580671
PMCPMC8475972
OpenAlexW3200461586

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.