Evidence map›Paper›PMID 34580387›Full record

ArticleScientific reports2021

Development and characterization of a DNA aptamer for MLL-AF9 expressing acute myeloid leukemia cells using whole cell-SELEX.

Kaylin G Earnest, Erin M McConnell, Eman M Hassan, Mark Wunderlich, Bahareh Hosseinpour, Bianca S Bono, Melissa J Chee, James C Mulloy, William G Willmore, Maria C DeRosa and 1 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 16 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. In vitro selection of aptamers and their applications.Nature reviews. Methods primers · 2023
    Article
  5. Review
  6. Article
  7. Optimization of Short RNA Aptamers for TNBC Cell Targeting.International journal of molecular sciences · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 2 countries.

Kaylin G EarnestDepartment of Chemistry, University of Cincinnati, Cincinnati, OH, USA.
Erin M McConnellDepartment of Chemistry, Carleton University, Ottawa, ON, Canada.
Eman M HassanDepartment of Chemistry, Carleton University, Ottawa, ON, Canada.
Mark WunderlichDivision of Experimental Hematology and Cancer Biology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA.
Bahareh HosseinpourDepartment of Chemistry, Carleton University, Ottawa, ON, Canada.
Bianca S BonoDepartment of Neuroscience, Carleton University, Ottawa, ON, Canada.
Melissa J CheeDepartment of Neuroscience, Carleton University, Ottawa, ON, Canada.
James C MulloyDivision of Experimental Hematology and Cancer Biology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA.
William G WillmoreDepartment of Chemistry, Carleton University, Ottawa, ON, Canada.
Maria C DeRosaDepartment of Chemistry, Carleton University, Ottawa, ON, Canada. maria.derosa@carleton.ca.
Edward J MerinoDepartment of Chemistry, University of Cincinnati, Cincinnati, OH, USA. merinoed@ucmail.uc.edu.
Carleton University · CACincinnati Children's Hospital Medical Center · USUniversity of Cincinnati · US

Funding

Therapeutic insights through patient derived leukemia xenograftsR50CA211404 · NCI · CINCINNATI CHILDRENS HOSP MED CTR · PI Mark Wunderlich · 2016 to 2026
$1.9M
Conferring in vivo metabolic resistance to a highly selective anti-AML agentR21CA185370 · NCI · UNIVERSITY OF CINCINNATI · PI MERINO, EDWARD J · 2014 to 2015
$370k
NCI NIH HHS R21 CA185370NCI NIH HHS R50 CA211404
6 · The paper itself

Abstract

Current classes of cancer therapeutics have negative side effects stemming from off-target cytotoxicity. One way to avoid this would be to use a drug delivery system decorated with targeting moieties, such as an aptamer, if a targeted aptamer is available. In this study, aptamers were selected against acute myeloid leukemia (AML) cells expressing the MLL-AF9 oncogene through systematic evolution of ligands by exponential enrichment (SELEX). Twelve rounds of SELEX, including two counter selections against fibroblast cells, were completed. Aptamer pools were sequenced, and three candidate sequences were identified. These sequences consisted of two 23-base primer regions flanking a 30-base central domain. Binding studies were performed using flow cytometry, and the lead sequence had a binding constant of 37.5 + / - 2.5 nM to AML cells, while displaying no binding to fibroblast or umbilical cord blood cells at 200 nM. A truncation study of the lead sequence was done using nine shortened sequences, and showed the 5' primer was not important for binding. The lead sequence was tested against seven AML patient cultures, and five cultures showed binding at 200 nM. In summary, a DNA aptamer specific to AML cells was developed and characterized for future drug-aptamer conjugates.

Indexed as

Leukemia, Myeloid, AcuteAptamers, NucleotideCell Line, TumorCells, CulturedFetal BloodHumansLigandsMyeloid-Lymphoid Leukemia ProteinOncogene Proteins, FusionSELEX Aptamer TechniqueAptamers, NucleotideLigandsMLL-AF9 fusion protein, humanMyeloid-Lymphoid Leukemia ProteinOncogene Proteins, Fusion

Identifiers

PMID34580387
PMCPMC8476576
OpenAlexW3201956822

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.