Evidence map›Paper›PMID 34580349›Full record

Observational studyScientific reports2021

Integrated genomics point to immune vulnerabilities in pleural mesothelioma.

Anca Nastase, Amit Mandal, Shir Kiong Lu, Hima Anbunathan, Deborah Morris-Rosendahl, Yu Zhi Zhang, Xiao-Ming Sun, Spyridon Gennatas, Robert C Rintoul, Matthew Edwards and 13 more

Erratum issuedOpen access · goldAbstract readObservational Study
In one paragraph

Observational study in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
2.8field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 22 citations in OpenAlex.

  1. Interferon Epsilon Loss Is Elusive 9p21 Link to Immune-Cold Tumors, Resistant to Immune Checkpoint Therapy, and Endogenous CXCL9/10 Induction.Journal of thoracic oncology : official publication of the International Association for the Study of Lung Cancer · 2025
    Review
  2. CDKN2A deletion is associated with immune desertification in diffuse pleural mesothelioma.Journal of experimental & clinical cancer research : CR · 2025
    Article
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  11. High Expression ofBioMed research international · 2023
    Article
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

23 authors at 7 institutions in 2 countries.

Anca Nastase *National Heart and Lung Institute, Imperial College London, Dovehouse Street, London, SW36LY, UK.
Amit Mandal *National Heart and Lung Institute, Imperial College London, Dovehouse Street, London, SW36LY, UK.
Shir Kiong LuNational Heart and Lung Institute, Imperial College London, Dovehouse Street, London, SW36LY, UK.
Hima AnbunathanNational Heart and Lung Institute, Imperial College London, Dovehouse Street, London, SW36LY, UK.
Deborah Morris-RosendahlNational Heart and Lung Institute, Imperial College London, Dovehouse Street, London, SW36LY, UK.
Yu Zhi ZhangNational Heart and Lung Institute, Imperial College London, Dovehouse Street, London, SW36LY, UK.
Xiao-Ming SunMedical Research Council Toxicology Unit, University of Cambridge, Cambridge, UK.
Spyridon GennatasNational Heart and Lung Institute, Imperial College London, Dovehouse Street, London, SW36LY, UK.
Robert C RintoulDepartment of Thoracic Oncology, Papworth Hospital, Cambridge, UK.
Matthew EdwardsClinical Genetics and Genomics, Royal Brompton and Harefield NHS Foundation Trust, London, UK.
Alex BowmanDepartment of Histopathology, Royal Brompton and Harefield NHS Foundation Trust, London, UK.
Tatyana ChernovaMedical Research Council Toxicology Unit, University of Cambridge, Cambridge, UK.
Tim BenepalDepartment of Oncology, St George's Healthcare NHS Foundation Trust, London, UK.
Eric LimDepartment of Thoracic Surgery, Royal Brompton and Harefield NHS Foundation Trust, London, UK.
Anthony Newman TaylorNational Heart and Lung Institute, Imperial College London, Dovehouse Street, London, SW36LY, UK.
Andrew G NicholsonNational Heart and Lung Institute, Imperial College London, Dovehouse Street, London, SW36LY, UK.
Sanjay PopatDepartment of Medicine, Royal Marsden Hospital, London, UK.
Anne E WillisMedical Research Council Toxicology Unit, University of Cambridge, Cambridge, UK.
Marion MacFarlaneMedical Research Council Toxicology Unit, University of Cambridge, Cambridge, UK.
Mark LathropDepartment of Human Genetics, McGill Genome Centre, Montreal, QC, Canada.
Anne M BowcockNational Heart and Lung Institute, Imperial College London, Dovehouse Street, London, SW36LY, UK.
Miriam F MoffattNational Heart and Lung Institute, Imperial College London, Dovehouse Street, London, SW36LY, UK. m.moffatt@imperial.ac.uk.
William O C M CooksonNational Heart and Lung Institute, Imperial College London, Dovehouse Street, London, SW36LY, UK. w.cookson@imperial.ac.uk.
Imperial College London · GBRoyal Brompton & Harefield NHS Foundation Trust · GBUniversity of Cambridge · GBMedical Research Council · GBInstitute of Cancer Research · GBMcGill Genome Centre · CASt George’s University Hospitals NHS Foundation Trust · GB

Funding

Cancer Research UK 29372Medical Research Council MC_UP_A600_1023Medical Research Council MC_UU_00025/4Medical Research Council MC_UU_00025/5Medical Research Council MC_UU_00025/7
6 · The paper itself

Abstract

Pleural mesothelioma is an aggressive malignancy with limited effective therapies. In order to identify therapeutic targets, we integrated SNP genotyping, sequencing and transcriptomics from tumours and low-passage patient-derived cells. Previously unrecognised deletions of SUFU locus (10q24.32), observed in 21% of 118 tumours, resulted in disordered expression of transcripts from Hedgehog pathways and the T-cell synapse including VISTA. Co-deletion of Interferon Type I genes and CDKN2A was present in half of tumours and was a predictor of poor survival. We also found previously unrecognised deletions in RB1 in 26% of cases and show sub-micromolar responses to downstream PLK1, CHEK1 and Aurora Kinase inhibitors in primary mesothelioma cells. Defects in Hippo pathways that included RASSF7 amplification and NF2 or LATS1/2 mutations were present in 50% of tumours and were accompanied by micromolar responses to the YAP1 inhibitor Verteporfin. Our results suggest new therapeutic avenues in mesothelioma and indicate targets and biomarkers for immunotherapy.

Indexed as

AgedAged, 80 and overAntineoplastic AgentsBiomarkers, TumorBiopsyDNA Copy Number VariationsFemaleGene Expression ProfilingGene Expression Regulation, NeoplasticGenomicsHippo Signaling PathwayHumansMaleMesothelioma, MalignantMiddle AgedMutationAntineoplastic AgentsBiomarkers, Tumor

Identifiers

PMID34580349
PMCPMC8476593
OpenAlexW3202252201

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.