Evidence map›Paper›PMID 34580201›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2021

A shared mechanistic pathway for pyridoxal phosphate-dependent arginine oxidases.

Elesha R Hoffarth, Kersti Caddell Haatveit, Eugene Kuatsjah, Gregory A MacNeil, Simran Saroya, Charles J Walsby, Lindsay D Eltis, K N Houk, Marc Garcia-Borràs, Katherine S Ryan

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.1field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Nature-Inspired Radical Pyridoxal-Mediated C-C Bond Formation.Journal of the American Chemical Society · 2024
    Article
  6. Article
  7. Article
  8. On the Evolutionary History of the Twenty Encoded Amino Acids.Chemistry (Weinheim an der Bergstrasse, Germany) · 2022
    Review
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 3 countries.

Elesha R HoffarthDepartment of Chemistry, The University of British Columbia, Vancouver, BC V6T 1Z1, Canada.ORCID 0000-0003-1192-2070
Kersti Caddell HaatveitDepartment of Chemistry and Biochemistry, University of California Los Angeles, Los Angeles, CA 90095.ORCID 0000-0002-2128-5119
Eugene KuatsjahDepartment of Microbiology and Immunology, The University of British Columbia, Vancouver, BC V6T 1Z3, Canada.ORCID 0000-0002-8793-2331
Gregory A MacNeilDepartment of Chemistry, Simon Fraser University, Burnaby, BC V5A 1S6, Canada.ORCID 0000-0002-1350-2494
Simran SaroyaDepartment of Chemistry, The University of British Columbia, Vancouver, BC V6T 1Z1, Canada.ORCID 0000-0002-9066-0242
Charles J WalsbyDepartment of Chemistry, Simon Fraser University, Burnaby, BC V5A 1S6, Canada.ORCID 0000-0003-3194-8227
Lindsay D EltisDepartment of Microbiology and Immunology, The University of British Columbia, Vancouver, BC V6T 1Z3, Canada.ORCID 0000-0002-6774-8158
K N HoukDepartment of Chemistry and Biochemistry, University of California Los Angeles, Los Angeles, CA 90095.
Marc Garcia-BorràsDepartment of Chemistry and Biochemistry, University of California Los Angeles, Los Angeles, CA 90095.ORCID 0000-0001-9458-1114
Katherine S RyanDepartment of Chemistry, The University of British Columbia, Vancouver, BC V6T 1Z1, Canada; ksryan@chem.ubc.ca.ORCID 0000-0003-1643-1940
University of British Columbia · CAUniversity of California, Los Angeles · USSimon Fraser University · CA

Funding

Steroselectivity of Synthetically Valuable Enzyme CatalystsR01GM124480 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI HOUK, KENDALL N · 2018 to 2021
$1.1M
NIGMS NIH HHS R01 GM124480
6 · The paper itself

Abstract

The mechanism by which molecular oxygen is activated by the organic cofactor pyridoxal phosphate (PLP) for oxidation reactions remains poorly understood. Recent work has identified arginine oxidases that catalyze desaturation or hydroxylation reactions. Here, we investigate a desaturase from the

Indexed as

Amino Acid OxidoreductasesCatalytic DomainCrystallography, X-RayEvolution, ChemicalMixed Function OxygenasesProtein ConformationPyridoxal PhosphateAmino Acid Oxidoreductasesarginine oxidaseMixed Function OxygenasesPyridoxal Phosphatemolecular dynamicsoxidasepyridoxal phosphatewaterX-ray crystallography

Identifiers

PMID34580201
PMCPMC8501904
OpenAlexW3203367348

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.