Evidence map›Paper›PMID 34580195›Full record

ArticleThorax2022

Lung function, airway and peripheral basophils and eosinophils are associated with molecular pharmacogenomic endotypes of steroid response in severe asthma.

Alvin T Kho, Michael J McGeachie, Jiang Li, Robert P Chase, Sami S Amr, Annette T Hastie, Gregory A Hawkins, Xingnan Li, Geoffrey L Chupp, Deborah A Meyers and 3 more

Open access · hybridAbstract read
In one paragraph

Article in Thorax, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.8field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 2 countries.

Alvin T Kho *Computational Health Informatics Program, Boston Children's Hospital, Boston, Massachusetts, USA ktantisira@health.ucsd.edu alvin_kho@hms.harvard.edu.ORCID 0000-0002-9887-312X
Michael J McGeachie *Channing Division of Network Medicine, Brigham and Women's Hospital, Boston, Massachusetts, USA.
Jiang Li *Channing Division of Network Medicine, Brigham and Women's Hospital, Boston, Massachusetts, USA.ORCID 0000-0002-9791-2553
Robert P ChaseChanning Division of Network Medicine, Brigham and Women's Hospital, Boston, Massachusetts, USA.
Sami S AmrChanning Division of Network Medicine, Brigham and Women's Hospital, Boston, Massachusetts, USA.
Annette T HastieCenter for Genomics and Personalized Medicine Research, Wake Forest Health Sciences, Winston Salem, North Carolina, USA.
Gregory A HawkinsCenter for Genomics and Personalized Medicine Research, Wake Forest Health Sciences, Winston Salem, North Carolina, USA.
Xingnan LiDivision of Genetics, Genomics and Precision Medicine, University of Arizona Health Sciences, Tucson, Arizona, USA.ORCID 0000-0002-1208-8658
Geoffrey L ChuppPulmonary & Critical Care Medicine, Yale School of Medicine, New Haven, Connecticut, USA.
Deborah A MeyersDivision of Genetics, Genomics and Precision Medicine, University of Arizona Health Sciences, Tucson, Arizona, USA.
Eugene R BleeckerDivision of Genetics, Genomics and Precision Medicine, University of Arizona Health Sciences, Tucson, Arizona, USA.
Scott T WeissChanning Division of Network Medicine, Brigham and Women's Hospital, Boston, Massachusetts, USA.
Kelan G TantisiraDepartment of Pediatrics, Division of Respiratory Medicine, University of California San Diego, La Jolla, California, USA ktantisira@health.ucsd.edu alvin_kho@hms.harvard.edu.
Brigham and Women's Hospital · USUniversity of Arizona · USWake Forest University · USUniversity of California San Diego · USYale University · US

Funding

THE PHARMACOGENETICS OF ASTHMA TREATMENTU01HL065899 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI TANTISIRA, KELAN G, WEISS, SCOTT T · 2000 to 2014
$38.5M
Transcriptomics to define biomarkers of neonatal vaccine immunogenicityU19AI118608 · NIAID · BOSTON CHILDREN'S HOSPITAL · PI LEVY, OFER · 2017 to 2021
$24.7M
Systems Biology of Airway DiseaseP01HL132825 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI WEISS, SCOTT T · 2016 to 2020
$12.6M
Leveraging Pharmacogenomics in Asthma for Predication, Mechanism and EndotypingR01HL161362 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI EUGENE ROLAND BLEECKER, GEOFFREY L CHUPP · 2022 to 2026
$8.4M
Integrative Metabolomics of Asthma SeverityR01HL123915 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI LASKY-SU, JESSICA A · 2014 to 2023
$7.0M
Asthma Exacerbations and MicroRNA prediction: Treatment Response in an Underserved Ethnicity (AEM-TRUE)R01HL139634 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI MCGEACHIE, MICHAEL JOHN · 2018 to 2022
$4.3M
Omic Determinants of Longitudinal Lung Function in AsthmaR01HL155742 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI LASKY-SU, JESSICA A, MCGEACHIE, MICHAEL JOHN · 2021 to 2025
$3.9M
Longitudinal Phenomics and Genetics of Severe AsthmaU10HL109164 · NHLBI · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI BLEECKER, EUGENE ROLAND, MEYERS, DEBORAH A. · 2011 to 2016
$3.8M
INTEGRATIVE PHARMACOGENOMICS OF LEUKOTRIENE INHIBITION IN ASTHMAR01HL092197 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI TANTISIRA, KELAN G · 2009 to 2013
$3.6M
MICRORNAS AND EARLY LIFE EXPOSURES IN THE DEVELOPMENTAL ORIGIN OF ASTHMAR01HL125734 · NHLBI · UNIVERSITY OF COLORADO DENVER · PI SHARMA, SUNITA · 2016 to 2020
$3.5M
MICRORNAS IN CIRCULATION: ONTOLOGIES OF ASTHMA SEVERITY AND TREATMENT (MICROCOAST)R01HL127332 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI TANTISIRA, KELAN G · 2015 to 2018
$3.4M
Mechanistic insights into asthma pathogenesis through the integration of asthma genes, risk exposures, and metabolomicsR01HL141826 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI LASKY-SU, JESSICA A · 2018 to 2021
$3.4M
NHLBI NIH HHS P01 HL132825NHLBI NIH HHS R01 HL092197NHLBI NIH HHS R01 HL123915NHLBI NIH HHS R01 HL125734NHLBI NIH HHS R01 HL127332NHLBI NIH HHS R01 HL129935NHLBI NIH HHS R01 HL139634NHLBI NIH HHS R01 HL141826NHLBI NIH HHS R01 HL155742NHLBI NIH HHS R01 HL161362NHLBI NIH HHS R01 HL162570NHLBI NIH HHS U01 HL065899NHLBI NIH HHS U10 HL109164NHLBI NIH HHS UG1 HL139054NIAID NIH HHS U19 AI118608
6 · The paper itself

Abstract

introductionAsthma is a complex disease with heterogeneous expression/severity. There is growing interest in defining asthma endotypes consistently associated with different responses to therapy, focusing on type 2 inflammation (Th2) as a key pathological mechanism. Current asthma endotypes are defined primarily by clinical/laboratory criteria. Each endotype is likely characterised by distinct molecular mechanisms that identify optimal therapies.

methodsWe applied unsupervised (without

resultsPC3 was associated with baseline Th2 clinical features including blood (rank-sum p=0.0082) and airway (rank-sum p=0.0024) eosinophilia, FEV

conclusionsTranscriptomic PCs from this unsupervised methodology define molecular pharmacogenomic endotypes that may yield novel biology underlying different subject-specific responses to corticosteroid therapy in asthma, and optimal personalised asthma care. Top contributing genes to these PCs may suggest new therapeutic targets.

Indexed as

AsthmaEosinophilsAdrenal Cortex HormonesBasophilsHumansInflammationLungSputumSteroidsAdrenal Cortex HormonesSteroidsasthmaasthma pharmacology

Identifiers

PMID34580195
PMCPMC9016241
OpenAlexW3201807608

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.