Evidence map›Paper›PMID 34579644›Full record

ArticleBMC bioinformatics2021

EvoLaps: a web interface to visualize continuous phylogeographic reconstructions.

François Chevenet, Denis Fargette, Stéphane Guindon, Anne-Laure Bañuls

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in BMC bioinformatics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

François ChevenetMIVEGEC, IRD, CNRS, Université de Montpellier, Montpellier, France. francois.chevenet@ird.fr.ORCID http://orcid.org/0000-0003-2622-6596
Denis FargetteIPME, IRD, CIRAD, Université de Montpellier, Montpellier, France.
Stéphane Guindon *LIRMM, CNRS, Université de Montpellier, Montpellier, France.
Anne-Laure Bañuls *MIVEGEC, IRD, CNRS, Université de Montpellier, Montpellier, France.

Funding

Agence Nationale de la Recherche ANR-10-LABX-04-01
6 · The paper itself

Abstract

backgroundPhylogeographic reconstructions serve as a basis to understand the spread and evolution of pathogens. Visualization of these reconstructions often lead to complex graphical representations which are difficult to interpret.

resultWe present EvoLaps, a user-friendly web interface to visualize phylogeographic reconstructions based on the analysis of latitude/longitude coordinates with various clustering levels. EvoLaps also produces transition diagrams that provide concise and easy to interpret summaries of phylogeographic reconstructions.

conclusionThe main contribution of EvoLaps is to assemble known numerical and graphical methods/tools into a user-friendly interface dedicated to the visualization and edition of evolutionary scenarios based on continuous phylogeographic reconstructions. EvoLaps is freely usable at www.evolaps.org .

Indexed as

PhylogenyCluster AnalysisPhylogeographyAncestral character statesData visualizationEvolutionary scenarioPhylogeography

Identifiers

PMID34579644
PMCPMC8474961

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.