Evidence map›Paper›PMID 34578133›Full record

ArticlePathogens (Basel, Switzerland)2021

Genomic Variability of Canine Parvoviruses from a Selected Population of Dogs and Cats in Sri Lanka.

Rasika Jinadasa, Sayani Ghosh, Simon Hills, Thushini Premalal, Ushani Atapattu, Manohari Fuward, Wasantha Kalupahana, Magdalena Dunowska

Open access · goldAbstract read
In one paragraph

Article in Pathogens (Basel, Switzerland), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.2field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 2 citations in OpenAlex.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Rasika JinadasaDepartment of Veterinary Pathobiology, Faculty of Veterinary Medicine & Animal Science, University of Peradeniya, Peradeniya 20400, Sri Lanka.ORCID 0000-0001-8538-782X
Sayani GhoshSchool of Veterinary Science, Massey University, Palmerston North 4410, New Zealand.
Simon HillsInstitute of Agriculture and Environment, Massey University, Palmerston North 4410, New Zealand.
Thushini PremalalDepartment of Veterinary Pathobiology, Faculty of Veterinary Medicine & Animal Science, University of Peradeniya, Peradeniya 20400, Sri Lanka.
Ushani AtapattuDepartment of Veterinary Pathobiology, Faculty of Veterinary Medicine & Animal Science, University of Peradeniya, Peradeniya 20400, Sri Lanka.ORCID 0000-0001-6723-9225
Manohari FuwardGovernment Veterinary Hospital, Gatambe, Peradeniya 20400, Sri Lanka.
Wasantha KalupahanaDepartment of Veterinary Pathobiology, Faculty of Veterinary Medicine & Animal Science, University of Peradeniya, Peradeniya 20400, Sri Lanka.ORCID 0000-0002-9804-3345
Magdalena DunowskaSchool of Veterinary Science, Massey University, Palmerston North 4410, New Zealand.ORCID 0000-0003-3874-0154
University of Peradeniya · LKMassey University · NZVavuniya General Hospital · LK

Funding

LEWIS FITCH VETERINARY RESEARCH GRANT (MASSEY UNIVERSITY) RM19066UNIVERSITY OF PERADENIYA RESEARCH GRANT RG/AF/2013/44V
6 · The paper itself

Abstract

The aim of the study was to identify canine parvovirus type 2 (CPV-2) subtypes circulating among a selected population of domestic dogs and cats in Sri Lanka and to investigate the evolutionary patterns among Sri Lankan viruses in the context of contemporary global CPV-2 sequences. Altogether, 40/61 (65.6%) samples tested were positive for CPV-2 DNA, including 31/48 (64.6%) dogs and 9/13 (69%) cats. All three subtypes (CPV-2a, CPV-2b and CPV-2c) were detected, with CPV-2a being most common. International median joining haplotype network of 291 CPV-2 sequences suggested that there was little barrier for CPV-2 moving between different geographical regions worldwide, including Sri Lanka, and that there was no correlation between the genetic structure within the molecular network and the decade of sample collection. By contrast, there was correlation between CPV-2 subtype and genetic structure, both within the international network and within the network built from 31 Sri Lankan CPV-2 sequences only. The structure within the latter was not correlated with the location of the veterinary clinic where the samples were submitted, the age or species of the host. Altogether, we have shown that there is considerable variability of CPV-2 genotypes circulating in Sri Lanka, which is likely driven by both local evolution and introduction from other countries. The similarity of CPV-2 obtained from cats and dogs suggests that cats may play a role in the epidemiology of CPV-2 in Sri Lanka.

Indexed as

canine parvovirusCPV-2CPV-2 evolutionCPV-2 hostCPV-2 subtypeshyplotype networkSri Lankaviral evolution

Identifiers

PMID34578133
PMCPMC8466987
OpenAlexW3198358826

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.